Scaffold Ga0151515_10172

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10172
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30475
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (76.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051701	Metagenome	143	Y
F096871	Metagenome	104	Y
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1017219	F100665	AGG	MMAKPYIKVVSIKDTKAGECKLTLDMNQAGREVILQAGVQKALADYMVEHSKKLTFWNKLQICWGILK*
Ga0151515_1017222	F096871	N/A	MWFFHLALISGVMVGLELKFLEEDTPYVFSLVIDLFIIRLVVQKIKHVR*
Ga0151515_1017239	F051701	AGGAG	MQVLIELNDDQADEVLVEALKSGYTVNRNFPDEPNFYEINQAFRTLLAYYMGDKEYAKYMHKMAKVRKNHNAKRLADAHSGL*