Scaffold Ga0151515_10008

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10008
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 73932
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (77.68%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058136	Metagenome	135	Y
F061842	Metagenome	131	N
F063684	Metagenome	129	Y
F066712	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_10008103	F066712	GGA	MNSMFNFNPDEKRVQLAALLQDPTQPYRKYNGPLGAGSSAGGGMNSEIMKMLMQDKQKKAPVVEKSTQYDPASQNFTPANY*
Ga0151515_1000839	F061842	GAG	MTLTQFKVVLEKFMLARSRYMNSPTSTTTKAWKAADLELANAYAKYMETRK*
Ga0151515_1000840	F058136	GGAG	MIQTNEEKVAAAIAYLRLRGKYLLDNGKWTPTPAGQTDVKKTMQQYREAVK*
Ga0151515_1000852	F066712	GGA	MNSMFNFNPDEKRVQLAALLQDPTQPYRKYSGPLGAGPSAGGGMNSEIMKMLMQDKQKKAPVVEKSTQYDPASQNFTPSNY*
Ga0151515_1000886	F063684	AGG	MRIQTAVISTKELQDALRIYCSDKAGIPDTVIIKSYAKQIVVSLDPGGMVAADEFNHAATGA*
Ga0151515_1000890	F061842	GGAGG	MTLTQFKVVLEKFMLARGRYMNSPTSVTTKAWKAADLELALAYNKYMETRK*
Ga0151515_1000891	F058136	GGAG	MIKTNDEKVREAIAYLRSRGKYLLDGCKWVPTPAEKTDVKKTMEQYREAMK*