Scaffold Ga0151517_1550

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1550
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13133
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (76.32%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F012455	Metagenome / Metatranscriptome	280	Y
F014849	Metagenome / Metatranscriptome	259	Y
F034573	Metagenome	174	Y
F084217	Metagenome / Metatranscriptome	112	N
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_15501	F012455	GGA	MLNEIKNKIIRIQELRRSNAATPIPNKKKYSRKVKHKNAK*
Ga0151517_155010	F000808	GGAG	VEYNYALTTSYDGKLIHTLRVSDMLTAVDAWNKCVDYGTAKEYATYNLSDLTGKMYTKTFYTNGEVVIK*
Ga0151517_155013	F003393	GAG	MKTLEKDDIIPIMDYHKVDMLTAGQLMVDDNILVDNEVVSITEIVSLADGYILEIINDFGERDTLEVTEYQQFDLMMLK*
Ga0151517_155019	F004132	AGGA	MSEVMTQEQLSVPYNPNLLVTYKAIPNTYSAPESPTFMTDKVTDIEWQLHHGRLNADTLKERNADLRWLEDQIVEWYDPNYSKEDVLQALAQKFELNPTKEIEVQGTVSFSGTINVPLSEIADFDVSNVTIDVELSSYEYDADLNVDDIQVEDHY*
Ga0151517_155022	F084233	N/A	MTLNVEIYEMDYSCSPGGVNCWEVSIDEWCVSDFKTAGDAIQYVLDKYPYDELNLNVKSLNWYFKEFANEYAV*
Ga0151517_155028	F007112	AGGA	MHTLHYIAVEANSKQEAFDKVVVSLQPNEDGYRIGDWSDWHVVGGGRWSTNAQKSKNFMDGYNHDSTDVIGYAENKEKFQEVVKNILKFRSQSMNRNIVEIKTDKFISQLVDYASEGGRGPWNGDNLMNVYSIKQAAEMLMGSWTCDSGFYDLQEHISEFEYLDERLDKPELAMRQYLVPVDFHF*
Ga0151517_155030	F006844	GGA	MATWDVEIIFEPTGTYMNFEYETDTEDEDDIFNEITNQISIIPERTDA*
Ga0151517_155032	F034573	AGGAG	MYRISRAKRTTNEEKVATAIGKLLSDFYLDLEKVGYYLARATPYLIYRRALEVLESAKFQEDKIEHDRLQYDQNKLP*
Ga0151517_15504	F084217	AGG	MSDYLNYLDEVYTDLVAEYGENITLAYHEANIKEM*
Ga0151517_15506	F005348	AGGA	MINSVMTFPCDTCDNKGYIFWGNDLDYDVEPCSCKDFTLGTLFTTKEAD*
Ga0151517_15508	F014849	AGGA	MLTNLDLLAIIIALSSSMFVMFLFYKQNVAQQKEIRYLRNLKKLK*