Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1528 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1528 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	13524
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (80.65%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13524

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (80.65%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035302	Metagenome	172	Y
F036680	Metagenome	169	Y
F039535	Metagenome / Metatranscriptome	163	Y
F049622	Metagenome	146	Y
F065780	Metagenome / Metatranscriptome	127	Y
F082668	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_152815	F039535	GGAG	MRKIVVLCVVSLIGFAGVVDAAEAPKKVVQVQMVQHPFDYVPEAKRNVPSWAKCPDLWNRLRDAGWLEKDVIKADAIIWRESRCNPLAHNKQDPNIVQGVKGSLGLFQINLFWIQRTTYYPKGYLQTVLDREFVPTDLFDVDVSIASAGALIVYDRSLGRCGWSAWLGC*
Ga0151517_152827	F082668	N/A	MSDAFATIVVALISTIGVIIVGLMQLFKKEAREAAVENRQDHAIVQQQLRMIYKTVNRVDDKLDKHLTDHEEGINGKSAKRH*
Ga0151517_152828	F035302	N/A	MKRPYTGNKDGLAAGERKGLRVFINQLTKLYPALWDNGSYVNRSMRGKTGTLSVHATGRAVDLSFRYMAKEKRGIPEGGRKQAMEAIDFVVKNADAFGLECILDYFPMPHGRGWRCDRASWNIYTKPEIHGAPMGDWVHFEISPAMADNPDAMREAFAQAAKPVA*
Ga0151517_152829	F049622	AGGA	MKKAQDIAQRLLSLFMANALAIVTGSAIVGGIPVWKAAALAGFTAVAQVAEKLAKASVDGTLTAQEISDAFGGNGKKIVKKRSVK*
Ga0151517_152830	F065780	GAGG	MKKIKDYFVDNTWTWVGTGLVLITLSGSTFRQALLLTGIGIVIHSILTLGSKE*
Ga0151517_15288	F036680	AGAAGG	MKITKHSLDHIELISSGDTALFEIRLIVAMNDWTNESDEFGAGALDWLMNLLCSASIGEDIQTGAEAFLRAMMTLDEQRVYLARVERISVNEEETK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1528

Overview

Ecosystem & Geography

Associated Families

Sequences