Scaffold Ga0151517_1494

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1494
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14293
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F055684	Metagenome / Metatranscriptome	138	N
F074545	Metagenome / Metatranscriptome	119	Y
F081071	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_149417	F074545	AGGA	MALTLSETSKNTERQLPEAGATTGVLFSLVDLGTQKVTWDGE
Ga0151517_14943	F055684	AGGAG	MWITSDNNIIRQPQGIRIGDVNHPASIFWCWSKGQLAEIGIKPYHPGSVPSGHRVTGAYNEEVDGEVYERFNTEPLPEPEPTPEEPVNDPV*
Ga0151517_14944	F000635	AGGAG	MTLSEIAQYAGEKVGKTDSDTLTFLQKAASLNYRRVWNFAPWRETVTSSTYSVGTGRTVTLGSNVETPLSVAYDKNEVEPIDLATIVSQDADLLEETRTGDPQLYHFTGRNTSGISQLDLYPRLDTAGTIALRVVEKLKCLTRNNYVVDFPPSTQALDDELKLPHVHHVVLALTHADALERERQYAKAQSVVQTANADLAAMANYELSQVGGIKQISPVQLGELTIEEITAA*
Ga0151517_14946	F081071	GAGG	VTAVEYIEASGVPESMWPNFREWFNWHQERGLVGVAKDGDQVAGVAIARCLDLGQEADHYAHNEDGDRVFVDLTVTSIDGKSNTLSRKALKCLLSILWDRFGPRRRITFKRNGVYKEYDYYNFMRKAMN*