Metagenome / Metatranscriptome Family F074545

Overview

Basic Information

• Family ID: F074545
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 119
• Average Sequence Length: 46 residues
• Representative Sequence: MALTISESAKMERKLPEAGATVGILYSLVDLGTQKTNWDNEEKW
• Number of Associated Samples: 78
• Number of Associated Scaffolds: 119

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 99.16 %
• % of genes near scaffold ends (potentially truncated): 100.00 %
• % of genes from short scaffolds (< 2000 bps): 92.44 %
• Associated GOLD sequencing projects: 71
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (87.395 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (35.294 % of family members)
• Environment Ontology (ENVO): Unclassified (73.109 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (73.950 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 22.22%
  β-sheet: 2.78%
  Coil/Unstructured: 75.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF09374	PG_binding_3	8.40
PF11645	PDDEXK_5	1.68
PF00622	SPRY	0.84

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.39 %
All Organisms	root	All Organisms	12.61 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.39 %
cellular organisms	root	All Organisms → cellular organisms	8.40 %
Viruses	superkingdom	All Organisms → Viruses	4.20 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.39 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	7.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.20 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.84 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.68 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.84 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.20 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	0.84 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.20 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.68 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.84 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.84 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.20 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.68 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.84 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.84 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003277|JGI25908J49247_10069588	Not Available	883
3300003393|JGI25909J50240_1060822	All Organisms → cellular organisms → Bacteria	772
3300003497|JGI25925J51416_10010034	All Organisms → cellular organisms → Bacteria → Proteobacteria	2814
3300004461|Ga0066223_1109657	Not Available	550
3300005582|Ga0049080_10286678	Not Available	533
3300006014|Ga0073919_1016382	Not Available	683
3300006805|Ga0075464_10999377	Not Available	525
3300007542|Ga0099846_1251928	Not Available	612
3300008962|Ga0104242_1035036	Not Available	858
3300009149|Ga0114918_10425965	Not Available	720
3300009152|Ga0114980_10469531	Not Available	718
3300009154|Ga0114963_10132055	Not Available	1498
3300009154|Ga0114963_10183924	Not Available	1219
3300009155|Ga0114968_10004736	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	10114
3300009155|Ga0114968_10111047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1664
3300009155|Ga0114968_10427158	Not Available	720
3300009155|Ga0114968_10771390	Not Available	501
3300009159|Ga0114978_10515032	Not Available	701
3300009160|Ga0114981_10004542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	8645
3300009161|Ga0114966_10367510	Not Available	851
3300009161|Ga0114966_10512771	Not Available	681
3300009163|Ga0114970_10430878	Not Available	728
3300009164|Ga0114975_10340095	Not Available	826
3300009164|Ga0114975_10689267	Not Available	540
3300009181|Ga0114969_10075599	All Organisms → cellular organisms → Bacteria	2201
3300009183|Ga0114974_10162119	Not Available	1391
3300009183|Ga0114974_10589934	Not Available	614
3300009684|Ga0114958_10154571	Not Available	1160
3300010157|Ga0114964_10095882	Not Available	1477
3300010158|Ga0114960_10214502	Not Available	998
3300010354|Ga0129333_11542967	Not Available	543
3300010370|Ga0129336_10535106	Not Available	629
3300010370|Ga0129336_10677273	Not Available	547
3300010885|Ga0133913_11467044	Not Available	1730
3300010885|Ga0133913_12076761	All Organisms → Viruses → Predicted Viral	1408
3300011113|Ga0151517_1494	All Organisms → cellular organisms → Bacteria	14293
3300013006|Ga0164294_11129122	Not Available	526
3300013014|Ga0164295_10116831	Not Available	1979
3300013014|Ga0164295_11178711	Not Available	595
3300013372|Ga0177922_10640390	Not Available	1500
3300017701|Ga0181364_1042339	Not Available	724
3300017701|Ga0181364_1066393	Not Available	554
3300017707|Ga0181363_1064738	Not Available	638
3300017716|Ga0181350_1110728	Not Available	667
3300017716|Ga0181350_1117887	Not Available	640
3300017716|Ga0181350_1119323	Not Available	634
3300017722|Ga0181347_1073207	All Organisms → Viruses → Predicted Viral	1008
3300017723|Ga0181362_1118155	Not Available	520
3300017736|Ga0181365_1047123	All Organisms → Viruses → Predicted Viral	1080
3300017736|Ga0181365_1081025	Not Available	795
3300017736|Ga0181365_1102856	Not Available	691
3300017736|Ga0181365_1128383	Not Available	606
3300017736|Ga0181365_1154067	Not Available	543
3300017761|Ga0181356_1019387	All Organisms → cellular organisms → Bacteria	2510
3300017761|Ga0181356_1187695	Not Available	620
3300017774|Ga0181358_1115593	Not Available	947
3300017774|Ga0181358_1251407	Not Available	556
3300017777|Ga0181357_1175060	Not Available	778
3300017777|Ga0181357_1268448	Not Available	588
3300017777|Ga0181357_1327095	Not Available	514
3300017778|Ga0181349_1189701	Not Available	716
3300017778|Ga0181349_1269909	Not Available	561
3300017780|Ga0181346_1236620	Not Available	644
3300017785|Ga0181355_1235617	Not Available	706
3300017785|Ga0181355_1272843	Not Available	643
3300017785|Ga0181355_1300477	Not Available	603
3300019093|Ga0187843_10346757	Not Available	603
3300019784|Ga0181359_1094578	Not Available	1104
3300019784|Ga0181359_1132877	Not Available	875
3300019784|Ga0181359_1195542	Not Available	656
3300019784|Ga0181359_1224292	Not Available	588
3300021963|Ga0222712_10090980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2156
3300022179|Ga0181353_1016027	Not Available	1944
3300022190|Ga0181354_1031314	Not Available	1739
3300022190|Ga0181354_1161705	Not Available	693
3300022190|Ga0181354_1250879	Not Available	504
3300022407|Ga0181351_1058853	Not Available	1584
3300022407|Ga0181351_1111770	All Organisms → Viruses → Predicted Viral	1038
3300022407|Ga0181351_1218365	Not Available	621
3300022752|Ga0214917_10174324	Not Available	1098
3300022752|Ga0214917_10208876	Not Available	954
3300022752|Ga0214917_10223490	Not Available	903
3300022752|Ga0214917_10269839	Not Available	778
3300023174|Ga0214921_10323157	Not Available	842
3300023174|Ga0214921_10445716	Not Available	640
3300023179|Ga0214923_10350221	Not Available	779
3300023179|Ga0214923_10496402	Not Available	601
3300024346|Ga0244775_11103733	Not Available	622
3300025896|Ga0208916_10088773	All Organisms → Viruses → Predicted Viral	1300
3300027563|Ga0209552_1017396	All Organisms → cellular organisms → Bacteria	2172
3300027586|Ga0208966_1103295	Not Available	780
3300027734|Ga0209087_1118185	Not Available	1101
3300027736|Ga0209190_1347327	Not Available	549
3300027741|Ga0209085_1019681	Not Available	3260
3300027770|Ga0209086_10176798	Not Available	1005
3300027782|Ga0209500_10167056	Not Available	1020
3300027785|Ga0209246_10289995	Not Available	629
3300027973|Ga0209298_10412570	Not Available	506
(restricted) 3300028581|Ga0247840_10172222	Not Available	1263
3300029930|Ga0119944_1010599	Not Available	1382
3300029930|Ga0119944_1021395	Not Available	876
3300031539|Ga0307380_10348462	Not Available	1354
3300031578|Ga0307376_10221936	Not Available	1283
3300031673|Ga0307377_10248764	Not Available	1364
3300031707|Ga0315291_10984394	Not Available	711
3300031952|Ga0315294_11594164	Not Available	506
3300031999|Ga0315274_11661811	Not Available	595
3300031999|Ga0315274_11964936	Not Available	527
3300032053|Ga0315284_12129073	Not Available	562
3300032092|Ga0315905_10334874	Not Available	1441
3300032116|Ga0315903_10167013	Not Available	1998
3300032116|Ga0315903_10219734	Not Available	1670
3300032116|Ga0315903_10273255	Not Available	1445
3300032173|Ga0315268_12622365	Not Available	517
3300032397|Ga0315287_11609049	Not Available	730
3300032397|Ga0315287_12378251	Not Available	572
3300034073|Ga0310130_0168920	Not Available	674
3300034111|Ga0335063_0612498	Not Available	511
3300034112|Ga0335066_0695608	Not Available	514

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.80%
Terrestrial	Environmental → Terrestrial	4.20%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	87.39%
Marine	Environmental → Aquatic → Marine	8.40%
Soil	Environmental → Terrestrial → Soil	3.36%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.84%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	45.38%
Lentic	Environmental → Aquatic → Freshwater → Lentic	36.97%
Coastal	Environmental → Aquatic → Marine → Coastal	5.88%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.36%
Clay	Environmental → Terrestrial → Soil → Clay	2.52%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.68%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.84%
Sand	Environmental → Terrestrial → Soil → Sand	0.84%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.84%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	38.66%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	36.97%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	6.72%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.36%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	2.52%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.68%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.84%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.84%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.84%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	35.29%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	23.53%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	11.76%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	6.72%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.36%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.36%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.52%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.52%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	2.52%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.68%
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	1.68%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.84%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.84%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.84%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.84%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	0.84%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	0.84%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental
3300003497	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN	Environmental
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental
3300006014	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T3_25-Nov-14	Environmental
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental
3300008962	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5	Environmental
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental
3300009154	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG	Environmental
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental
3300009160	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG	Environmental
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental
3300009164	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG	Environmental
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental
3300009684	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG	Environmental
3300010157	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG	Environmental
3300010158	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG	Environmental
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental
3300010885	northern Canada Lakes Co-assembly	Environmental
3300011113	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep	Environmental
3300013006	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG	Environmental
3300013014	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG	Environmental
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental
3300017707	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N	Environmental
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental
3300019093	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental
3300023179	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510	Environmental
3300024346	Whole water sample coassembly	Environmental
3300025896	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)	Environmental
3300027563	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)	Environmental
3300027586	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)	Environmental
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental
3300027741	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)	Environmental
3300027770	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)	Environmental
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental
3300027785	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)	Environmental
3300027973	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)	Environmental
3300028581 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m	Environmental
3300029930	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727	Environmental
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental
3300031673	Soil microbial communities from Risofladan, Vaasa, Finland - TR-3	Environmental
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental
3300034073	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL	Environmental
3300034111	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186	Environmental
3300034112	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25908J49247_100695881	3300003277	Freshwater Lake	MALTLSESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTPKVRL
JGI25909J50240_10608221	3300003393	Freshwater Lake	MALTISESAKMERKLPEAGATVGILYSLVDLGTQKTNWDNEEKWTPK
JGI25925J51416_100100347	3300003497	Freshwater Lake	MALTLSESAKQERKLPEAGATVGMLYSLVDLGTQKTNWDNEEKWSPKVRLT
Ga0066223_11096571	3300004461	Marine	MSLTLSESAKATERQLPEAGSTTGVLVQLIDLGLQETNWDG
Ga0049080_102866782	3300005582	Freshwater Lentic	MALTISESQKMERKLPEAGATVGVLYSLVDLGHQKT
Ga0073919_10163822	3300006014	Sand	MALTLSESAKQERKLPEAGATVGMLYSLVDLGTQK
Ga0075464_109993771	3300006805	Aqueous	MSLTISATESKGGDRQLPEAGATTGVCFSIVDLGTQKTNWDGEEKWTPKVRL
Ga0099846_12519282	3300007542	Aqueous	MALTISESQKMERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTPKVRLTFELPDQ
Ga0104242_10350363	3300008962	Freshwater	MSLTLSESAKATERQLPEAGPTMGVLVSLVDLGHQKTNWDGE
Ga0114918_104259652	3300009149	Deep Subsurface	MALTLSESAKQERKLPEAGATVGMLYSLVDLGTQETNW
Ga0114980_104695312	3300009152	Freshwater Lake	MSLTLSESAKATERQLPEAGSTMGVLVQLIDMGLQETNWDGEKK
Ga0114963_101320551	3300009154	Freshwater Lake	MALTLSESQKSERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTPKVRLTFELPDQ
Ga0114963_101839241	3300009154	Freshwater Lake	MSLTISATESKGGDRQLPEAGATTGVCFSIVDLGTQKTNWDGEEK
Ga0114968_1000473614	3300009155	Freshwater Lake	MALTLSESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTPKVRLT
Ga0114968_101110471	3300009155	Freshwater Lake	MSLTISATESNNKERQLPEAGATIGVCFSIVDKGNQKTNWDGQEKYMPKVRLAFELPE
Ga0114968_104271581	3300009155	Freshwater Lake	MSLTISATESKGGERQLPEAGATIGVCFSIVDKGNQKTNWDGQEKYMPKVRLAF
Ga0114968_107713901	3300009155	Freshwater Lake	MSLTISATESNNKERQLPEAGATIGVCFSIVDKGNQKTNWDGQEKYMPKVRLAF
Ga0114978_105150321	3300009159	Freshwater Lake	MALTISESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKW
Ga0114981_1000454212	3300009160	Freshwater Lake	MSLTLSESAKATERQLPEAGTTIGVLVQLIDMGLQETNWDGEKKMSPKVRLTFE
Ga0114966_103675101	3300009161	Freshwater Lake	MSLTISATESKGGDRQLPEAGATTGVCFSIVDLGTQKTN
Ga0114966_105127711	3300009161	Freshwater Lake	MALTLSESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKW
Ga0114970_104308781	3300009163	Freshwater Lake	MSLTISATESNNKERQLPEAGATIGVCISIVDKGTQKTNWDGQEKYMPKVRL
Ga0114975_103400953	3300009164	Freshwater Lake	MSLTISATESKGGDRQLPEAGATTGVCFSIVDLGTQKTNWDGEEKWTPKVRLS
Ga0114975_106892672	3300009164	Freshwater Lake	MSLTISATESKGGDRQLPEAGATTGVCFSIVDKGTQKTNWDGEEKWTPKVRLSF
Ga0114969_100755996	3300009181	Freshwater Lake	MALTISESAKQERKLPEAGATVGVLYSLVDLGHQK
Ga0114974_101621191	3300009183	Freshwater Lake	MALTISESQKMERKLPEAGATVGVLYSLVDLGHQKTNWDNQ
Ga0114974_105899342	3300009183	Freshwater Lake	MALTISESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWS
Ga0114958_101545711	3300009684	Freshwater Lake	MSLTISATESKGGDRQLPEAGATTGVCFSIVDEGTQKTNWDGEEKWTPKVRL
Ga0114964_100958821	3300010157	Freshwater Lake	MALTLSESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTPKVR
Ga0114960_102145023	3300010158	Freshwater Lake	MSLTLSESAKATERQLPEAGPTMGVLVSLVDLGHQKTNWD
Ga0129333_115429671	3300010354	Freshwater To Marine Saline Gradient	MSLTLSETQKNTERQLPEAGATIGTLFSLVDLGTQKVSWDGEE
Ga0129336_105351061	3300010370	Freshwater To Marine Saline Gradient	MSLTLSESAKATERQLPEAGTTMGVLVQLIDMGLQETN
Ga0129336_106772732	3300010370	Freshwater To Marine Saline Gradient	MSLTISETAKNTERQLPEAGATVGVLFSLVDLGTQKVSWDGEEKYT
Ga0133913_114670445	3300010885	Freshwater Lake	MSLTLSESAKATERQLPEAGSTMGVLVQLIDMGLQETNWDGEKKMSP
Ga0133913_120767611	3300010885	Freshwater Lake	MALTLSESAKQERKLPEAGATVGVLFSIVDMGHLETNFDNQKKWTPKVR
Ga0151517_149417	3300011113	Freshwater	MALTLSETSKNTERQLPEAGATTGVLFSLVDLGTQKVTWDGE
Ga0164294_111291222	3300013006	Freshwater	MALTISESAKMERKLPEAGATVGILYSLVDLGTQK
Ga0164295_101168316	3300013014	Freshwater	MALTISESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWSPKVRLTFELPD
Ga0164295_111787112	3300013014	Freshwater	MALTISESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEK
Ga0177922_106403905	3300013372	Freshwater	MALTISESAKMERKLPEAGATIGILYSLVDLGTQKTNWDNEEKWTPKVRLTF
Ga0181364_10423393	3300017701	Freshwater Lake	MALTLSESAKQERKLPEAGATVGMLYSLVDLGTQKT
Ga0181364_10663932	3300017701	Freshwater Lake	MALTISESAKMERKLPESGATVGILYSLVDLGTQEQNWDGEKKFMPKVRL
Ga0181363_10647381	3300017707	Freshwater Lake	MALTLSETAKNTERQLPEAGATVGVLFSLVDLGTQEVT
Ga0181350_11107281	3300017716	Freshwater Lake	MALTISESAKQERKLPEAGATVGVLYSLVDLGHQKTN
Ga0181350_11178872	3300017716	Freshwater Lake	MALTLSESAKQERKLPEAGATVGMLYSLVDLGTQKTNWDNEE
Ga0181350_11193231	3300017716	Freshwater Lake	MALTISESAKQERKLPEAGATVGILYSLVDLGTQKT
Ga0181347_10732071	3300017722	Freshwater Lake	MALTISESAKMERKLPEAGATVGILYSLVDLGTQKTNWDNEEKWTPKVRLTF
Ga0181362_11181552	3300017723	Freshwater Lake	MALTISESAKMERKLPEAGATVGILYSLVDLGTQKTNWDNEEKWTPKVRLSFELPDQL
Ga0181365_10471234	3300017736	Freshwater Lake	MALTISESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQE
Ga0181365_10810253	3300017736	Freshwater Lake	MALTISESAKMERKLPEAGATVGILYSLVDLGTQKTNWDNEE
Ga0181365_11028561	3300017736	Freshwater Lake	MALTISESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQ
Ga0181365_11283832	3300017736	Freshwater Lake	MALTISESAKQERKLPESGATVGILYSLVDLGTQEQNWDGEKKFMPKVRLT
Ga0181365_11540672	3300017736	Freshwater Lake	MALTLSESAKQERKLPEAGATVEMLYSLVDLSTQKTNWDND
Ga0181356_10193877	3300017761	Freshwater Lake	MALTISESAKMERKLPEAGATIGILYSLVDLGTQKT
Ga0181356_11876952	3300017761	Freshwater Lake	MALTISESAKMERKLPEAGATIGILYSLVDLGTQKTNWDNEEK
Ga0181358_11155931	3300017774	Freshwater Lake	MALTISESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWSPK
Ga0181358_12514072	3300017774	Freshwater Lake	MALTISESQKMERKLPEAGATVGMLYSLVDLGTQKT
Ga0181357_11750603	3300017777	Freshwater Lake	MALTISESAKMERKLPEAGATVGILYSLVDLGTQKTNW
Ga0181357_12684481	3300017777	Freshwater Lake	MALTISESAKMERKLPEAGATVGILYSLVDLGTQKTNWDNEEKWTPKVRL
Ga0181357_13270952	3300017777	Freshwater Lake	MALTISESAKMERKLPEAGATVGVLYSLVDLGHQKTNW
Ga0181349_11897012	3300017778	Freshwater Lake	MGLTISESQKMERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTP
Ga0181349_12699092	3300017778	Freshwater Lake	MALTISESAKMERKLPEAGATVGILYSLVDLGTQEQIW
Ga0181346_12366202	3300017780	Freshwater Lake	MALTISESAKQERKLPESGATVGILYSLVDLGTQEQNWDGEKKFMPKVRLTFE
Ga0181355_12356171	3300017785	Freshwater Lake	MALTISESAKMERKLPEAGATIGILYSLVDLGTQKTNWDNEEKWTPKVRLTFELPEQLD
Ga0181355_12728431	3300017785	Freshwater Lake	MALTISESAKMERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTPKVRL
Ga0181355_13004772	3300017785	Freshwater Lake	MALTLSESAKQERKLPEAGATVGVLYSLVDLGHQKT
Ga0187843_103467571	3300019093	Freshwater	MALTLSESAKQERKLPEAGATVGMLYSLVDLGTQKTNWDNEEKWSPK
Ga0181359_10945781	3300019784	Freshwater Lake	MSLTISETSKNTERQLPEAGATVGVLFSLVDLGTQEVTW
Ga0181359_11328771	3300019784	Freshwater Lake	MALTISESAKMERKLPEAGATVGILYSLVDLGTQKTNWDNEEKWTPKVR
Ga0181359_11955421	3300019784	Freshwater Lake	MALTISESQKMERKLPEAGATVGMLYSLVDLGTQKTNWDNEEKWSPKV
Ga0181359_12242922	3300019784	Freshwater Lake	MALTISESQKMERKLPEAGATVGMLYSLVDLGTQKTNWD
Ga0222712_100909806	3300021963	Estuarine Water	MSLTISATESKGGDRQLPEAGATTGVCFSIVDLGTQKTNW
Ga0181353_10160276	3300022179	Freshwater Lake	MSLTISETSKNTERQLPEAGATVGVLFSLVDLGTQEVTWDGETKWT
Ga0181354_10313146	3300022190	Freshwater Lake	MALTISESAKMERKLPEAGATVGILYSLVDLGTQKTNWDNEEKWTPKV
Ga0181354_11617053	3300022190	Freshwater Lake	MGLTISESQKMERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTPKVRLT
Ga0181354_12508792	3300022190	Freshwater Lake	MALTISESAKMERKLPEAGATIGILYSLVDLGTQKTNWDNEEKWTPKVR
Ga0181351_10588535	3300022407	Freshwater Lake	MALTISESAKQERKLPEAGATVGVLYSLVDLGHQKTNWD
Ga0181351_11117703	3300022407	Freshwater Lake	MALTISESAKMERKLPEAGATVGILYSLVDLGTQKTNWDNEEKW
Ga0181351_12183652	3300022407	Freshwater Lake	MALTLSESQKSERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTPKVRL
Ga0214917_101743244	3300022752	Freshwater	MSLTISETAKNTERQLPEAGATVGVLFSLVDLGTQEVTWDGETKWTPKLRLAFEL
Ga0214917_102088761	3300022752	Freshwater	MSLTISATESNNKERQLPEAGATIGVCFSIVDLGHQKTNW
Ga0214917_102234901	3300022752	Freshwater	MALTISESQKMERKLPEAGATVGVLYSLVDLGHQKTNWDNQE
Ga0214917_102698393	3300022752	Freshwater	MSLTISETAKNTERQLPEAGATVGVLFSLVDLGTQKVSWDGE
Ga0214921_103231571	3300023174	Freshwater	MALTLSESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEK
Ga0214921_104457161	3300023174	Freshwater	MSLTISATESKGGDRQLPEAGATTGVCFSIVDLGTQ
Ga0214923_103502213	3300023179	Freshwater	MALTLSETSKNTERQLPEAGATIGVLFSEVDLGTQKVIWDGEEKWTPKIRLAFELPEQT
Ga0214923_104964021	3300023179	Freshwater	MALTLSETAKNTERQLPEAGATVGVLFSLVDLGTQKVSWDGEEKYTPK
Ga0244775_111037331	3300024346	Estuarine	MALTISESAKMERKLPEAGATVGILYSLVDLGTQKTNWDNEEKWTPKVRLTFELPEQLDE
Ga0208916_100887734	3300025896	Aqueous	MALTLSESAKQERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTPKVRLTFE
Ga0209552_10173966	3300027563	Freshwater Lake	MALTLSESAKQERKLPEAGATVGMLYSLVDLGTQKTNWDNEEKW
Ga0208966_11032953	3300027586	Freshwater Lentic	MALTLSESAKQERKLPEAGATVGILYSLVDLGTQKTNWDNEE
Ga0209087_11181851	3300027734	Freshwater Lake	MSLTISATESKGGDRQLPEAGATTGVCFSIVDLGTQKTNWDGEEKWTPK
Ga0209190_13473271	3300027736	Freshwater Lake	MSLTISATESKGGDRQLPEAGATTGVCFSIVDLGTQKTNWDGEEKWTPKVRLSFELPEQTIEG
Ga0209085_10196816	3300027741	Freshwater Lake	MSLTISATESKGGDRQLPEAGATTGVCFSIVDLGTQKTNWDGEEKWTPKVRLSFE
Ga0209086_101767984	3300027770	Freshwater Lake	MSLTISATESNNKERQLPEAGATIGVCFSIVDKGNQKTNWDGQEKYMPKVRL
Ga0209500_101670561	3300027782	Freshwater Lake	MSLTLSESAKATERQLPEAGSTMGVLVQLIDMGLQETNWD
Ga0209246_102899952	3300027785	Freshwater Lake	MALTISESAKMERKLPEAGATVGILYSLVDLGTQEQIWDGEKKCMPKVR
Ga0209298_104125701	3300027973	Freshwater Lake	MSLTISATESKGGDRQLPEAGATTGVCFSIVDLGTQKTNWDGEE
(restricted) Ga0247840_101722223	3300028581	Freshwater	MALTISESQKMERKLPEAGATVGMLYSLVDLGTQETNWDGEKKYTPKVRLT
Ga0119944_10105991	3300029930	Aquatic	MALTLSETSKNTERQLPEAGASTGVLFSLVDLGTQKVTWDGEDKWTPKLRL
Ga0119944_10213954	3300029930	Aquatic	MSLTLSEASKNTERQLPEAGATTGVLFSLVDLGTQKVTWDG
Ga0307380_103484623	3300031539	Soil	MALTLSESAKQERKLPEAGATVGMLYSLVDLGTQETNWDGEKKYTPKVRLTFEL
Ga0307376_102219361	3300031578	Soil	MALTLSESAKQERKLPEAGATVGMLYSIVDMGHLERTWDGQKKWTPMVR
Ga0307377_102487643	3300031673	Soil	MALTLSESAKQERKLPEAGATVGMLYSIVDMGHLERTW
Ga0315291_109843941	3300031707	Sediment	MALTISESQKMERKLPEAGATVGMLYSLVDLGTQKTNWDNEE
Ga0315294_115941641	3300031952	Sediment	MALTISESAKMERKLPEAGATIGILYSLVDLGTQKTNWDNEEKWTPKVRLTFE
Ga0315274_116618111	3300031999	Sediment	MALTISESAKMERKLPEAGATIGILYSLVDLGTQKTNW
Ga0315274_119649362	3300031999	Sediment	MALTISESAKMERKLPEAGATIGILYSLVDLGTQKTNWDNEEKWTPKVRLTFELPE
Ga0315284_121290732	3300032053	Sediment	MALTISESAKQERKLPEAGATVGILYSLVDLGTQKTNWDNEEKWTPKVRL
Ga0315905_103348745	3300032092	Freshwater	MALTLSESAKQERKLPEAGATVGMLFSLVDLGTQKQTWDGEEKWSPKVR
Ga0315903_101670131	3300032116	Freshwater	MSLTLSETSKNTERQLPEAGATVGVLFSLVDEGTQKVSWDGEEKWTPKLRLAFELPD
Ga0315903_102197345	3300032116	Freshwater	MALTISAESKNSERQLPEAGATVGILFSLVDLGHQKTNWDGEEKWSPKVRLTFEL
Ga0315903_102732551	3300032116	Freshwater	MALTLSETAKNTERQLPEAGATVGVLFSLVDLGTQEVTWDGETKWTPK
Ga0315268_126223651	3300032173	Sediment	MALTLSESAKQERKLPEAGATVGVLFSIVDMGHLETNFDNQKK
Ga0315287_116090492	3300032397	Sediment	MALTISESAKMERKLPEAGATVGMLYSLVDLGTQKTNWDN
Ga0315287_123782511	3300032397	Sediment	MALTISESQKMERKLPEAGATVGMLYSLVDLGTQKTNWDNEEKWSPKVRLTF
Ga0310130_0168920_3_158	3300034073	Fracking Water	MSLTLSETQKNTERQLPEAGATIGTLFSLVDLGTQKVSWDGEDKWTPKLRLA
Ga0335063_0612498_2_181	3300034111	Freshwater	MSLTISETAKNTERQLPEAGATVGVLFSLVDLGTQEVTWDGETKWTPKLRLAFELPEQVI
Ga0335066_0695608_1_129	3300034112	Freshwater	MALTISESQKMERKLPEAGATVGMLYSLVDLGTQKTNWDNEEK