Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1491 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1491 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14375
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (68.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14375

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (68.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F004599	Metagenome / Metatranscriptome	431	N
F020681	Metagenome / Metatranscriptome	222	Y
F043389	Metagenome / Metatranscriptome	156	N
F083918	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_149111	F000468	N/A	MTAWSPDWKLTVAGVDYTDIAISDIAHQAGRDDIYQQPNPSYLSITFVALSGQTLPFDINDSLSLQVKDSSAAYVNLFGGDITDITVAVGATGSNATVVEYTVLAMGSLVKLAKELYAGTISQDEDGNQIYDLLSSVLLGTWNDVPAASTWATYDATETWANALNLGLGEIDTPGLYTMENRAAETDTIYNIASLIANSAFGYLYEDNEGNIGYADADHRQNYLLTYGYVDLDANHALGQGLSTITRSGDIRNDIAINYGNNFGSQKTATSAASIALYGYKAESINSVIHSAVDAQAVADRYIAQRAYPLPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPEQISNGEFEGYVEGWSWSTRFNELFLTINLSPVAFSQVAMRWNTTPITETWQTIDPTLTWEYATIVA*
Ga0151517_149119	F043389	GGA	MIETSTMWIFLYCILGIFIGWAAVVKIMEQSFDRGYWSGRSAGWRAANEHYEKIRKLKSESVFDYDKQN*
Ga0151517_149121	F004599	GAG	MMAFNLSEYEDVATLNKWLISNYPNFRSDISVISADPDKGYILVQATLWRDSNDQSPAVSNIAFGSRDTYIQNMRKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVDDAPVKNIYGKSGNSKVIEMALRKSFADDGKSTSEPTTWSIGDVAEALSTKPKQQECSHGLMILKEGTAKSGKPYYGYVCSAPKGEQCDAKWAVTAGNGSWFFREEE*
Ga0151517_149122	F083918	AGGAGG	MGYVEIVDGSHYLARLENDKVTIEPTIDRCVSCNDDRLLHDGQYLVCAICHCRQ*
Ga0151517_149123	F020681	AGGA	MVKFRCNFCSATTEFIWLDQYQTATGFRVFQCLNCCAVGTKNLAEATDTQETVQRCTSCGAWQFADQECHTCALVRSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1491

Overview

Ecosystem & Geography

Associated Families

Sequences