Scaffold Ga0151517_1127

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1127
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 32623
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (50.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F010917	Metagenome	297	Y
F019968	Metagenome / Metatranscriptome	226	Y
F019996	Metagenome / Metatranscriptome	226	Y
F020539	Metagenome / Metatranscriptome	223	Y
F024771	Metagenome	204	N
F031868	Metagenome	181	N
F037125	Metagenome	168	Y
F050330	Metagenome	145	Y
F085365	Metagenome / Metatranscriptome	111	N
F091614	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_112714	F037125	N/A	MIDRKQRGSHDLEVTIYDLKKDIDLLKEDIQAKDIYIKKLEQELDKSIRSEN*
Ga0151517_112717	F019996	N/A	MSKCIFCKRPMINKLEQHIKACHKCIVDLLMKKHNLKVKKQAPISINTKKYGKV*
Ga0151517_112719	F010917	N/A	MNLDKITFGSRIINLNLIDKEQANKKHIFGEFDSDTNIITLDKSLDDIQMSNTIIHEVCHLIHDHFKIDLSAKAEELVCNSIANGICDILYQNQDLLEFLYKSLKKE*
Ga0151517_112721	F050330	N/A	MANETTSTSLNKLYTNKVKVKGTYRVYKPKPLKMPRKKK*
Ga0151517_112725	F006893	AGGA	MHNSTTENITESTKKILCDKKLYKDINFFEVPHNKVLLAVIRSITKKSFAQIGKDYKKSWFSIYASVKDTQKNGLKSFTNKVIELVREDLK*
Ga0151517_112729	F019968	N/A	LGLLWKENKMSKKEIGVICSMTYFEMKMMVAVLSRILLDNEIRGEHTKKRIFNLISKLNGMLTKQGFKNA*
Ga0151517_112735	F031868	AGGAG	MKTVKQEIEDLHNQSKKDRYFASTYAEYYYTLLDHSDLSLDEFYKLYPQYDLEKTDSLYWKQFMKQWKETWKPNTI*
Ga0151517_112736	F091614	GGA	METKHDIINRLASNLRYLRINTKIEQPMSCKIKYMSQKDLAQMMGIGCEQQISKFELGTNIMSSYQIYKVSKVFDVSVDSLFGDLTKSDYKKTIKYDIYA*
Ga0151517_112741	F024771	GAG	MNDKKYIENFNHESYENRTKNYLNISEDRFVQYCTSRGYLYRKLGLNAVSDSQSFAESVIPLFAKLPTLIKSFPDYFVYAPKEAHKQEQFFVELKNATWEQSKTLAKIKVRDIKRYIYFEQSFTNYHTRFTICFPLADKIIFKSVDQILKLLPKSQLKCFPNDNIEYFEVQLN*
Ga0151517_112749	F020539	N/A	MARTTNEELISLRGHITGIKREVKILGTSLYKLEKKMENLYWSILCGLGALSLALITIFLAK*
Ga0151517_112750	F085365	N/A	MIYTTEKNNFYSKENSMLDYKSFKEFWSKFYADAFEDVKTFWKDYAKACEQFYSKK*