Scaffold Ga0151517_1107

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1107
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35092
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (63.33%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F007911	Metagenome / Metatranscriptome	342	N
F016963	Metagenome	243	N
F042872	Metagenome	157	Y
F043284	Metagenome	156	N
F044969	Metagenome	153	N
F057981	Metagenome	135	N
F072095	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_110711	F005502	AGGAG	VRSLLWIAAILGMTSGQAANVMIDMRPQPKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK*
Ga0151517_110712	F016963	GGAGG	VIEVLPEQSTHEQLLNRVRALARELAEAKAALAAAEGRENDLIDRIRSGL*
Ga0151517_110719	F072095	AGG	MIRDLEQEGVLSAPAASYGSGALSMTMALIDLQAKNKELRNRLERIEDIIKGLIEKQGVQS*
Ga0151517_110721	F042872	AGG	MTLPTIINQNVEGNRIGGSNPSTATNYHYNDLRQSSNTAVITEPKKPYYQQLNLNSRGGYDLTAEAFIYHPNPAVCRMWHAQHEASK*
Ga0151517_11073	F043284	AGG	MKLLSVINKLNETRDKAIELVGRTIALASDAGEIIAVARTEGKDVLALCEEAGITEEVGKRYEKVAATQKRLTNGDADPSLMRQTYLRIGILPDPITMSEPSEPKHFLFPIMKARQWLASRGLKFISQDKELRAQFLAEAEPIVNAYKEMTQ*
Ga0151517_110731	F006891	N/A	MSTDQVAELSERLSVVREAVARVETRQTVILDLLERSQASLGEYHGRLTNMEREAHTIKTKLWLVALISGAVVSTVWELIKRRFSF*
Ga0151517_110742	F044969	AGG	MSASLTVDASKLQKAMKAFIGNTKAEAAKEMRIQARMLCVSLANSTQPFGFGNDVKKVGEKAVTRDIDRVYKSAGTASKEIAKLSLPKGKTKTQNAEQMAKALAALVLGKTGGSKRKRAESAQQLLNRIRQQPYVGTQVGQFDGGKSHESARYGKSKRVPKNQFVRQIVTKDSPLSRYFKDKRGNVGIAKSGWAVCAGILGGFRGIPKWVYRHTGGGRVNDKSQTALGTFSKPYVQMTNTIPWINNVISAGTIQKSIDIQVLKMIKRLSIIANYESKKAGL*
Ga0151517_110744	F057981	N/A	MSEEALLQELDNSLISPDRFFKDQRLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKKTIRLAWDKDVFREKLMDWIAEMTEDDRNTASVMCSAILAEANKARVNVIPSAIAAPPGNA*
Ga0151517_110747	F007911	AGAAG	MPAVTMLDRLIEAAFQELLTATVTGPTYHLSHDKTENMPPSIVIKATLGTEEPVRGSGVFAVPVEIVVDDSYDDTTVDAHTQKCSKILQAFYDSSTLTARLNATTAIGSARCYNAKVDSVEPEADDEERTMRRTFKLAVIAYPNSIAS*
Ga0151517_11077	F007747	GGAGG	MKHLGKITFGKSRPAPKQILVDVTYDAKTAKALHAFGLKQLKKDPEIVIEYVIVKALEAFAKK*