Scaffold Ga0138568_1102031

Overview

Basic Information

• Taxon OID: 3300011080
• Scaffold ID: Ga0138568_1102031
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 754
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090816	Metagenome / Metatranscriptome	108	Y
F098277	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138568_11020311	F090816	N/A	MHCELCDGELRFKRIEPDDPAFGMEVEIFVCSKCGHVHSFPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA*
Ga0138568_11020312	F098277	AGGA	MPSIDSSEIEFQCPSCGHELKQTVAGLKAERHMICPCCGIGINIDTDKLANATEEMQKAIDKT