Metagenome / Metatranscriptome Family F090816

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090816
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	77 residues
Representative Sequence	MRNLIQPPPSMHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSLPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA
Number of Associated Samples	80
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.15 %
% of genes near scaffold ends (potentially truncated)	27.78 %
% of genes from short scaffolds (< 2000 bps)	89.81 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.037 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (23.148 % of family members)
Environment Ontology (ENVO)	Unclassified (66.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (50.926 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.18% β-sheet: 24.55% Coil/Unstructured: 67.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF10091	Glycoamylase	8.33
PF11752	DUF3309	1.85
PF01339	CheB_methylest	0.93
PF07635	PSCyt1	0.93
PF00724	Oxidored_FMN	0.93
PF02541	Ppx-GppA	0.93
PF11994	DUF3489	0.93
PF02796	HTH_7	0.93
PF07927	HicA_toxin	0.93
PF00166	Cpn10	0.93
PF05977	MFS_3	0.93
PF00325	Crp	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0248	Exopolyphosphatase/pppGpp-phosphohydrolase	Signal transduction mechanisms [T]	1.85
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	1.85
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.93
COG1902	2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family	Energy production and conversion [C]	0.93
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
All Organisms	root	All Organisms	37.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
cellular organisms	root	All Organisms → cellular organisms	37.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22.22 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.70 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.93 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.70 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.93 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.78 %
unclassified Methylocapsa	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa	0.93 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Bradyrhizobium sp. 48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 48	0.93 %
Bradyrhizobium sp. Leaf396	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Leaf396	0.93 %
Methylocapsa sp. S129	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	0.93 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.93 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003368\|JGI26340J50214_10062840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1000	Open in IMG/M
3300004468\|Ga0068977_1016394	Not Available	524	Open in IMG/M
3300004471\|Ga0068965_1005970	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300004478\|Ga0068972_1595248	Not Available	556	Open in IMG/M
3300004603\|Ga0068918_1262035	Not Available	634	Open in IMG/M
3300004606\|Ga0068962_1001433	Not Available	748	Open in IMG/M
3300004973\|Ga0072322_1264783	Not Available	546	Open in IMG/M
3300006050\|Ga0075028_100450830	Not Available	744	Open in IMG/M
3300006059\|Ga0075017_100250426	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300006059\|Ga0075017_101100607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 48	620	Open in IMG/M
3300006086\|Ga0075019_10457780	Not Available	787	Open in IMG/M
3300006102\|Ga0075015_100331978	Not Available	844	Open in IMG/M
3300006102\|Ga0075015_100428616	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300006172\|Ga0075018_10761590	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300006174\|Ga0075014_100857679	Not Available	541	Open in IMG/M
3300009520\|Ga0116214_1171558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	811	Open in IMG/M
3300009521\|Ga0116222_1245283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	772	Open in IMG/M
3300009522\|Ga0116218_1207881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	883	Open in IMG/M
3300009549\|Ga0116137_1130018	Not Available	711	Open in IMG/M
3300009632\|Ga0116102_1078970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	976	Open in IMG/M
3300009637\|Ga0116118_1277289	Not Available	510	Open in IMG/M
3300009643\|Ga0116110_1109147	Not Available	934	Open in IMG/M
3300009665\|Ga0116135_1159484	Not Available	846	Open in IMG/M
3300009672\|Ga0116215_1175127	Not Available	949	Open in IMG/M
3300009672\|Ga0116215_1176522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	945	Open in IMG/M
3300009700\|Ga0116217_10004479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12444	Open in IMG/M
3300009760\|Ga0116131_1068548	Not Available	1106	Open in IMG/M
3300010339\|Ga0074046_10268087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1056	Open in IMG/M
3300010339\|Ga0074046_10520763	Not Available	709	Open in IMG/M
3300010341\|Ga0074045_10202618	Not Available	1328	Open in IMG/M
3300010341\|Ga0074045_10732011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	627	Open in IMG/M
3300010343\|Ga0074044_10664684	Not Available	680	Open in IMG/M
3300010343\|Ga0074044_10734476	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300010379\|Ga0136449_100662527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1761	Open in IMG/M
3300010379\|Ga0136449_102567004	Not Available	728	Open in IMG/M
3300011080\|Ga0138568_1102031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	754	Open in IMG/M
3300011082\|Ga0138526_1159147	Not Available	676	Open in IMG/M
3300014151\|Ga0181539_1109762	Not Available	1148	Open in IMG/M
3300014159\|Ga0181530_10391864	Not Available	709	Open in IMG/M
3300014159\|Ga0181530_10460186	Not Available	639	Open in IMG/M
3300014167\|Ga0181528_10535246	Not Available	646	Open in IMG/M
3300014199\|Ga0181535_10284361	Not Available	990	Open in IMG/M
3300014199\|Ga0181535_10592009	Not Available	636	Open in IMG/M
3300014200\|Ga0181526_10188252	Not Available	1321	Open in IMG/M
3300014200\|Ga0181526_10335235	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300014491\|Ga0182014_10007905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11012	Open in IMG/M
3300014491\|Ga0182014_10163168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1243	Open in IMG/M
3300014491\|Ga0182014_10549956	Not Available	562	Open in IMG/M
3300014498\|Ga0182019_10954639	Not Available	620	Open in IMG/M
3300014502\|Ga0182021_10183858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2439	Open in IMG/M
3300014502\|Ga0182021_13796258	Not Available	501	Open in IMG/M
3300014638\|Ga0181536_10380982	Not Available	635	Open in IMG/M
3300016702\|Ga0181511_1262875	Not Available	662	Open in IMG/M
3300016750\|Ga0181505_10634708	Not Available	834	Open in IMG/M
3300017925\|Ga0187856_1054482	Not Available	1736	Open in IMG/M
3300017929\|Ga0187849_1019001	All Organisms → cellular organisms → Bacteria	3947	Open in IMG/M
3300017929\|Ga0187849_1288749	Not Available	616	Open in IMG/M
3300017938\|Ga0187854_10222777	Not Available	826	Open in IMG/M
3300017940\|Ga0187853_10102264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1409	Open in IMG/M
3300017940\|Ga0187853_10434955	Not Available	577	Open in IMG/M
3300017946\|Ga0187879_10295709	Not Available	900	Open in IMG/M
3300017955\|Ga0187817_10134916	Not Available	1566	Open in IMG/M
3300017988\|Ga0181520_10007856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15451	Open in IMG/M
3300017988\|Ga0181520_10319773	Not Available	1154	Open in IMG/M
3300017988\|Ga0181520_10574865	Not Available	786	Open in IMG/M
3300018004\|Ga0187865_1262773	Not Available	574	Open in IMG/M
3300018006\|Ga0187804_10488582	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300018008\|Ga0187888_1308509	Not Available	607	Open in IMG/M
3300018019\|Ga0187874_10452361	Not Available	517	Open in IMG/M
3300018023\|Ga0187889_10064384	Not Available	1907	Open in IMG/M
3300018023\|Ga0187889_10295025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	719	Open in IMG/M
3300018025\|Ga0187885_10402078	Not Available	613	Open in IMG/M
3300018026\|Ga0187857_10428025	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300018038\|Ga0187855_10516824	Not Available	695	Open in IMG/M
3300018038\|Ga0187855_10522111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	692	Open in IMG/M
3300018040\|Ga0187862_10690788	Not Available	597	Open in IMG/M
3300018040\|Ga0187862_10908135	Not Available	503	Open in IMG/M
3300018042\|Ga0187871_10731635	Not Available	551	Open in IMG/M
3300018044\|Ga0187890_10584869	Not Available	629	Open in IMG/M
3300018047\|Ga0187859_10420277	Not Available	736	Open in IMG/M
3300018057\|Ga0187858_10110983	All Organisms → cellular organisms → Bacteria	1862	Open in IMG/M
3300018057\|Ga0187858_10245730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1150	Open in IMG/M
3300025432\|Ga0208821_1057655	Not Available	684	Open in IMG/M
3300025448\|Ga0208037_1072602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300025506\|Ga0208937_1141449	Not Available	512	Open in IMG/M
3300027568\|Ga0208042_1162074	Not Available	559	Open in IMG/M
3300027625\|Ga0208044_1212743	Not Available	513	Open in IMG/M
3300027698\|Ga0209446_1053429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	1023	Open in IMG/M
3300027812\|Ga0209656_10011756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	5503	Open in IMG/M
3300027824\|Ga0209040_10044092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2729	Open in IMG/M
3300027824\|Ga0209040_10382543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	659	Open in IMG/M
3300027898\|Ga0209067_10522395	Not Available	676	Open in IMG/M
3300027905\|Ga0209415_10051553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Leaf396	5280	Open in IMG/M
3300030494\|Ga0310037_10309047	Not Available	672	Open in IMG/M
3300030659\|Ga0316363_10117767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1165	Open in IMG/M
3300031235\|Ga0265330_10173645	Not Available	913	Open in IMG/M
3300031235\|Ga0265330_10331112	Not Available	643	Open in IMG/M
3300031241\|Ga0265325_10276597	Not Available	754	Open in IMG/M
3300031708\|Ga0310686_104850311	Not Available	631	Open in IMG/M
3300031759\|Ga0316219_1290623	Not Available	562	Open in IMG/M
3300031902\|Ga0302322_103965515	Not Available	505	Open in IMG/M
3300032160\|Ga0311301_10014496	All Organisms → cellular organisms → Bacteria	23837	Open in IMG/M
3300032160\|Ga0311301_11178077	Not Available	985	Open in IMG/M
3300032160\|Ga0311301_12448435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	586	Open in IMG/M
3300033402\|Ga0326728_10044452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	6754	Open in IMG/M
3300033402\|Ga0326728_10201243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2005	Open in IMG/M
3300033402\|Ga0326728_10431785	Not Available	1106	Open in IMG/M
3300033402\|Ga0326728_11125610	Not Available	529	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.22%
Host-Associated	Host-Associated	2.78%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	58.33%
Terrestrial	Environmental → Terrestrial	38.89%
Plants	Host-Associated → Plants	2.78%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	50.00%
Soil	Environmental → Terrestrial → Soil	34.26%
Sediment	Environmental → Aquatic → Sediment	8.33%
Peat	Environmental → Terrestrial → Peat	4.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.78%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	49.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.15%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.78%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.93%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	38.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.15%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.56%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.56%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.85%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.93%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	23.15%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	22.22%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	11.11%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.33%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.33%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	5.56%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.63%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	3.70%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	2.78%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.85%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004468	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004471	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 57 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004478	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004603	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004606	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 54 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004973	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 19 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009760	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011080	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011082	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300025432	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40 (SPAdes)	Environmental	Open in IMG/M
3300025448	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100 (SPAdes)	Environmental	Open in IMG/M
3300025506	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031759	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26340J50214_100628402	3300003368	Bog Forest Soil	MRNLIQPPPSMHCELCDGELRFKRIEPDDPAFVMEVEIFVCSKCGHVHSLPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA*
Ga0068977_10163941	3300004468	Peatlands Soil	MRNLTQPPPSMRCEHCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSLPVFHDPYAAHTASNMPPGKVG
Ga0068965_10059701	3300004471	Peatlands Soil	MRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSLQVFHDPYTAHTASNMPPGKVGRSGGSSSR*
Ga0068972_15952481	3300004478	Peatlands Soil	MRNLIQPPPSMHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSFPVIHDPYAAHTASSMAPGKVGQPGGSSS
Ga0068918_12620351	3300004603	Peatlands Soil	MRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSLPVFHDPYAAHTASKK
Ga0068962_10014331	3300004606	Peatlands Soil	MRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSLPVFHDPYTAHTASKKVGRSGGSSSR*
Ga0072322_12647831	3300004973	Peatlands Soil	MRNLIQPPPSMHCELCDGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSFPVIHDPYAAHTASNMPPGKVGRSGSSR*
Ga0075028_1004508302	3300006050	Watersheds	MRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSHSVFHDPYAAHTASNMPPGKVG
Ga0075017_1002504263	3300006059	Watersheds	MRNLTQPPPSMRCEHCNGELRFERIEPDDPVFDMEVEKFVCAKCAHAQLFRVIHDPYAAHSASNMPPGKVGLAGRVQQ*
Ga0075017_1011006071	3300006059	Watersheds	MRNLIQPPPSMHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSLPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLT*
Ga0075019_104577802	3300006086	Watersheds	MRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSLTVFHDPYTAHTASNMPPGKVGRSGGSSS
Ga0075015_1003319782	3300006102	Watersheds	MRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSFPVIHDPYAAHTASKYAAR*
Ga0075015_1004286162	3300006102	Watersheds	MRNLTQPPPSMRCEHCNGELRFERIEPDDPVFDMEVVKFVCAKCAHAQLFRVIHDPYAAHTPSNMPPGKVGLGGRVQQ*
Ga0075018_107615902	3300006172	Watersheds	TKSHIDRDPFERPSDSLRGMSYERKWRMRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSLQVFHDPYAAHTASNMPPGMVGRSGGSSSR*
Ga0075014_1008576792	3300006174	Watersheds	MRNLIQPPPSMHCELCYGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSHPVMHNHYAAHNASSMPPGKVGQPGGSGRK*
Ga0116214_11715582	3300009520	Peatlands Soil	MHCELCYGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSFPVIHDPYAAHTASSMAPGKVGQRGEVRQQ*
Ga0116222_12452831	3300009521	Peatlands Soil	GELRFKRIEPDDPAFVMEVEIFVCSKCGHVHSLPVMHNHYAAHNASSMPPGKVGQPGGSG
Ga0116218_12078811	3300009522	Peatlands Soil	MHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSFPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA*
Ga0116137_11300182	3300009549	Peatland	MRNLVEPPSSMHCKLCDGVLRFKRIEPDNPVFDMEVEIFVCSKCGHEHSRRMIYDPYIAHAARSMPPRMRVGTLL*
Ga0116102_10789701	3300009632	Peatland	MHCEFCYGELRFKLIEPDDPVLDTEVEIFVCATCGHKQSRSVIHDRYAAHTASSMPAGKVGQPDGSGSNRHA*
Ga0116118_12772891	3300009637	Peatland	MRNLVEPPSSMHCKRCDGELRFKRIERDDPVFEMEVEIFVCSKCGRVHSRRMIYDPYIAYAARSMPPSMLGQPGGSGSSRYH*
Ga0116110_11091471	3300009643	Peatland	MRNLVEPPSSMHCKLCDGELRFKRIEPDNPVFDMEVEIFVCSKCGHEHSRRMIYDPYIAYAARSMPPSMLGQPGGSGSSRYH*
Ga0116135_11594842	3300009665	Peatland	MRSLVEPPPSLHCELCHGELQFKRSEPDDPTFDRQVEIFVCVECGRVHSHRMIHNPYAPHTARSVPRG
Ga0116215_11751271	3300009672	Peatlands Soil	MHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSLPVMHNHYAAHNASSMPPGKMGQPGGSG*
Ga0116215_11765221	3300009672	Peatlands Soil	MRNLIQPPPSMHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSFPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA*
Ga0116217_100044793	3300009700	Peatlands Soil	MHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSFPVIHDPYAAHTASSMAPGKVGQPGEVRQQ*
Ga0116131_10685483	3300009760	Peatland	MRSLVQPSPSMHCELCYGELRFKLSEPDDPIFDVGVEIFVCTKCGHERSLRVLHDPYAAHTASSMPLGTLGQPDGSGSHRYA*
Ga0074046_102680873	3300010339	Bog Forest Soil	MHCELCDGELRFKRIEPEDPAFDMEVEIFVCSKCGNVHSLPVIHDPYAAHTASSMALGKVGQPG
Ga0074046_105207632	3300010339	Bog Forest Soil	MHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSLRVMHNHYAAHNASSMPPGKVGQPGGSGRK*
Ga0074045_102026182	3300010341	Bog Forest Soil	MHCELCDGELRFKRIEPEDPAFDMEVEIFVCSKCGNVHSLPVIHDPYAAHTASSMALGKVGQPGGSGSNRLT*
Ga0074045_107320112	3300010341	Bog Forest Soil	ELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSLPVMHNHYAAHNASSMPPGKVGQPGGSGRK*
Ga0074044_106646841	3300010343	Bog Forest Soil	MHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSLPVMHNHYAAHNASSMPPGKVGQPGGSGRE*
Ga0074044_107344762	3300010343	Bog Forest Soil	MRNLTQPPPSMRCEHCNGELRFERIEPDNPVFDMEVEKFVCAKCAHAQLFRVIHDPYAAHTASNMPPGKVGLAGRVQQ*
Ga0136449_1006625273	3300010379	Peatlands Soil	MHCELCDGELRFKRIEPDNPALDMEVEIFVCSKCGHVHSLPVMHNHYAAHNASSMPPGKVGQPGGSG*
Ga0136449_1025670041	3300010379	Peatlands Soil	MRNLVHPPPSLHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHMHSLPVMHNHYAAHTASSLPRGKVGK*
Ga0138568_11020311	3300011080	Peatlands Soil	MHCELCDGELRFKRIEPDDPAFGMEVEIFVCSKCGHVHSFPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA*
Ga0138526_11591471	3300011082	Peatlands Soil	MSYEKKWRMRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSLPVFHDPYAAHTASKKV
Ga0181539_11097622	3300014151	Bog	MRNLVEPPSSMHCKRCDGELRFKRIERDDPVFEMEVEIFVCSKCGHEHSRRMIYDPYIAYAARSMPPSMLGQPGGSGSSRYH*
Ga0181530_103918641	3300014159	Bog	MRNLVEPPSSMHCKRCDGELRFKRIEPDDPVFDMEVEIFVCSKCGRVHSRQMIYDPYIAYAARSMPPSMLGQPGGSGSSRYH*
Ga0181530_104601861	3300014159	Bog	MRNLVEPPPSLRCHLCDGELRFKRIESDDPVFDTEVDIFVCVKCGRAHSRRRIHDRYAAHTARSMPPGTVDQPGGAGSNRYA*
Ga0181528_105352461	3300014167	Bog	VEPPPSLHCERCHGDLRFKRTEPDDPVFDIVVEIFVCAECGQMHSRRMSRDPYAAHTARRILRGKVEQPGGTGSDRYARRAGDGFS*
Ga0181535_102843612	3300014199	Bog	MRCERCDGELRFKLIEPDDLVLDTEIEIFVCAKCGLRHPRSVVHDRYAAHTAGGIPPGNVGQPRGPGGNRPA*
Ga0181535_105920091	3300014199	Bog	MRNLVEPLPSLHCERCDGELRFKRIEPADPVFDAEVEIFVCAKCGRAHSRRMKHDPYAARVARNMPRDTVDRPGGDRYA*
Ga0181526_101882522	3300014200	Bog	MHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSHAVMHNHYAAHNPSSLPPGKVGQPGGSGRT*
Ga0181526_103352351	3300014200	Bog	MRCKRCNGELRFKRIEPDDPFVDMEVEIFVCAKCGHAHSFPVFHDPYAAHTARNMPPGKVGRSTG*
Ga0182014_100079054	3300014491	Bog	MRNLVEPPSSMYCKFCNGELRFKRIEPVDTILDIEVAIFVCAKCGHEHSRQRIYDRYVARAARSMPPSMLGQPGGVRQQ*
Ga0182014_101631683	3300014491	Bog	MRNLVEPLLSLHCERCDGELRFKRIESADPVFDAEVEIFVCVTCGRAHSRRMSYDPYAARTARSTPRGNVDQPDGAGGNRYA*
Ga0182014_105499561	3300014491	Bog	MRNLVEPPPSLHCDRCRGELRFKRIEPDDRVFDIVVEIFVCAQCGRVHSRRVNRDPYAAHAARSIPRGKADQPGEAGGN*
Ga0182019_109546391	3300014498	Fen	MRNLVEPPPSLHCELCGGLLLFKRIESDNSVFDTEVEIFVCVKCGRAHPSKRFRDPYAAHTAQSMPPGKV
Ga0182021_101838583	3300014502	Fen	MHCELCYGELRFKLSEPDDPIFDMGVEIFVCTKCGHEHSLRVPHDPYAAHTASRMPLGTLGQPDGSGSHRHV*
Ga0182021_137962581	3300014502	Fen	LHCERCDGELRFKRIESADPIFDAEVEIFVCVKCGHVRSRRMICDPYAAHAARTMPPSMLGQPGESD
Ga0181536_103809821	3300014638	Bog	MRNLVEPPSSIYCKLCDGELRFKRIEPDDPVFDMEVEIFVCSKCGRVHSRRMIYDPYIAYAARSMPPSMWGQPGGSGSSRYH*
Ga0181511_12628751	3300016702	Peatland	MRILVQPLLSLHCKLCDGELRFNRIESDDPVLDTEVEIFVCATCGHKHSRSVIHDRYAAHTTTSIPRGNMDQPSGAGSSRDA
Ga0181505_106347081	3300016750	Peatland	MRNLIQPLPSLHCKLCDGELRFKQIEPDDQVFDTEVEIFVCVKCGRAHSRRMVHDPYAARTTRSIPRGNVDQPDGAGSNGYA
Ga0187856_10544823	3300017925	Peatland	MRNLVEPPSSIYCKLCDGELRFKRIEPDDPVFDIEVAIFVCAKCGHEHSRRMIHDPYIAHTARSMPPSMLGQPGGPGSSRYHLMGGDGFS
Ga0187849_10190014	3300017929	Peatland	MRNLVEPPSSLCCKICAGELRFKRIEPVDTVLDIEVAIFVCAKCGHEHSRQMIYDRYVAHTARSMPPSMLGQPGGSGSSRYH
Ga0187849_12887491	3300017929	Peatland	MRNLVEPPSSIYCKLCDGELRFKRIEPDDPVFDIEVAIFVCAKCGHEHSRRMIHDPYIAHTARSMPPSMLPLR
Ga0187854_102227772	3300017938	Peatland	MRSLVQPSPSMHCELCYGELRFKLSEPDDPIFDMGVEIFVCTKCGHERSLRVLHDPYAAHTARSMPRGNVDLQGGAGSNRYA
Ga0187853_101022641	3300017940	Peatland	PMRNLVEPTSSLCCKICAGELRFKRIEPVDTVLDIEVAIFVCAKCGHEHSRQMIYDRYVAHTARSMPPSMLGQPGGSGSSRYH
Ga0187853_104349551	3300017940	Peatland	MRNLVEPPSSMHCKLCDGVLRFKRIEPDNPVFDMEVEIFVCSKCGHEHSRRMIYDPYIAHAARSMPPRMRVGTLL
Ga0187879_102957092	3300017946	Peatland	MRNLTQPPPSLRCERCNGELRFKRIEPDDPVFDIEVEIFVCAKCGHAHSLQVFHDPYAAHTASKKVGRSGGSSSR
Ga0187817_101349161	3300017955	Freshwater Sediment	MRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSLPVFHDPYAAHTASKKVGRSGGSSSR
Ga0181520_1000785614	3300017988	Bog	MRNLVEPPPSLRCELCHSELRFKRIEPDNPVFDIEVAIFVCVQCGRVHSRRMNHDPYAPRAARRMPGGRMDQPAGAGGNRYA
Ga0181520_103197732	3300017988	Bog	MRNLVEPPSSMYCKVCEGELRFKRIDPVNSFFDIEVAIFVCVRCGREHSHRMIHDPYIARAARRMPPSMLRQPGGSGSGSYQ
Ga0181520_105748651	3300017988	Bog	MRNLVEPLPSLHCERCDGELRFKRIEPADPVFDAEVEIFVCVKCGRAHTRRMSYDPYAAHTARSMPRGSVDQPGGAGSNRYA
Ga0187865_12627731	3300018004	Peatland	MRSLVQPSPSMHCELCYGELRFKLSEPDDPIFDMGVEIFVCTKCGHERSLRVLHDPYAAHTASSMPLGTLGQSDGS
Ga0187804_104885821	3300018006	Freshwater Sediment	LNVPPLRGMSYERKWRMRNLTQPPPSMRCERCNGELRFKRIEPGDPVFDMEVEIFVCAKCGHAHSLPVFHDPYAAHTASKKVGRSGGSSSR
Ga0187888_13085091	3300018008	Peatland	MRNLVEPPSSIYCKLCDGELRFKRIEPDDPVFDIEVAIFVCAKCGHEHSRRMIHDPYIAHTARSMPPSMLGQPGG
Ga0187874_104523611	3300018019	Peatland	MRNLVEPPSSMHCKRCDGELRFKRIERDDPVFDIEVAIFVCAKCGHEHSRRMIHDPYIAHTARSMPPSMLGQPGG
Ga0187889_100643842	3300018023	Peatland	MRNLVEPPSSLRCKICAGELRFKRIEPVDTVLDIEVAIFVCAKCGHEHSRQRIYDRYVARAVRSMPPSMLGQPGGIRQQ
Ga0187889_102950252	3300018023	Peatland	MRNLVEPPSSMYCKFCNGELRFKRIEPVDTILDIEVAIFVCAKCGHEHSRQRIYDRYVARAARSMPPSMLGQPGGSGSSRYH
Ga0187885_104020781	3300018025	Peatland	MRNLVEPPSSMHCKRCDGELRFKRIEPDDPVFDIEVEIFVCVECGRAHSRRRIDDPYAAHIARSMARGNVDQPGGAGSDRYA
Ga0187857_104280251	3300018026	Peatland	MRNLIQPPPSMHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVRSFPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA
Ga0187855_105168241	3300018038	Peatland	MRNLVEPPSSMHCKCCDGELRFKQIERDDPVFDMEVEIFVCVKCGHVHSRRMICDPYAAHAARSMPPSMLGQP
Ga0187855_105221111	3300018038	Peatland	MRNLVEPLPSLHCEFCDGELRFKRIESDDPVFDIEVEIFVCVKCGRAHSRRMIHDPYAAHTARSMLSGKVDQPDSVWQ
Ga0187862_106907881	3300018040	Peatland	MRNLVEPPSSMHCKLCDGELRFKRIEPDNPVFDMEVEIFVCSKCGHEHSRRMIYDPYIAYAARSMPPSMLGQPGGSGSSRYH
Ga0187862_109081351	3300018040	Peatland	MRNLVEPPPSLRCHLCDGELRFKRIESDDPVFDTEVDIFVCVKCGRAHSRRRIHDRYAAHTTRLMPRGNVDQPGGAGSNRYA
Ga0187871_107316351	3300018042	Peatland	MRNLVEPPSSLHCKLCDGELRFKPIKPDDPVFDMEVEIFVCVKCGHVHSRRMICDPYAAHAARSMPPSMLGQPGGSGSSRYH
Ga0187890_105848692	3300018044	Peatland	MRNLVEPPTSMHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSLPVMHNHYAAHTASSMAPGKVGQPGGSGRK
Ga0187859_104202772	3300018047	Peatland	MRNLVEPPSSMHCKCCDGELRFKQIERDDPVFDMEVEIFVCSKCGRVHSRRMIYDPYIAYAARSMPPSMLGQP
Ga0187858_101109832	3300018057	Peatland	QPLPSVHCKHCGGELLFKRIEPGDPVFDMEVEIFVCAKCGHAHSLPVFHDPYAAHTASKKVGRSGGSSSR
Ga0187858_102457302	3300018057	Peatland	MRNLVEPPSSMHCKCCDGELRFKQIERDDPVFDMEVEIFVCSKCGRVHSRRMIYDPYIAYAARSMPPSMLGQPGGSGSSRYH
Ga0208821_10576551	3300025432	Peatland	MRNLVEPPSSIYCKLCDGELRFKRIEPDDPVFDIEVAIFVCAKCGHEHSRRMIHDPYIAHTARSMPPSMLGQPG
Ga0208037_10726021	3300025448	Peatland	LCDGELRFKRIESDDPVFDTEVEIFVCIKCGRAHSRRMIHDPYAAHIASSMRHGALGQLDRVRQQ
Ga0208937_11414491	3300025506	Peatland	MRNLVEPPSSMHCKRCDGELRFKRIERDDPVFEMEVEIFVCSKCGRVHSRRMIYDPYIAYAARSMPPSMLGQPGGSGSSRYH
Ga0208042_11620741	3300027568	Peatlands Soil	MRNLIQPPPSMHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSFPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA
Ga0208044_12127431	3300027625	Peatlands Soil	MRNLIQPPPSMHCELCDGELRFKRIEPDDPVFDMEVQIFVCAKCGHAHSLPVFHDPYAAHTASNMPPGKVGRSGGSGSNRLT
Ga0209446_10534291	3300027698	Bog Forest Soil	MRNLIQPPPSLHCELCDGELRFKRIEPDDPAFVMEVEIFVCSKCGHVHSLPVIHDPYAAHTASSMAPGKV
Ga0209656_100117563	3300027812	Bog Forest Soil	MRNLIQPPPSMHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSLPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA
Ga0209040_100440922	3300027824	Bog Forest Soil	MRNLIQPPPSMHCELCDGKLRFKRIEPDDPAFDMEVEIFVCSKCGHVRSFPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA
Ga0209040_103825431	3300027824	Bog Forest Soil	MRNLIQPPPSMHCELCDGELRFKRIEPDDPAFVMEVEIFVCSKCGHVHSLPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA
Ga0209067_105223952	3300027898	Watersheds	MRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSLQVFHDPYTAHTASKKVGRSGGSSSR
Ga0209415_100515537	3300027905	Peatlands Soil	LRNLIQPPPSMHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSFPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA
Ga0310037_103090472	3300030494	Peatlands Soil	MSYEKKWRMRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSLPVFHDPYAAHTASNMPPGKVGRSGGSGS
Ga0316363_101177673	3300030659	Peatlands Soil	KEVALRNLIQPPPSMHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSFPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA
Ga0265330_101736451	3300031235	Rhizosphere	MRNLVEPLQSLHCERCDGELRFKRIESADPIFDAEVEIFVCVKCGRTHSRRMRYDPYAAHTARSMPRGNVDQPGGAGGNRYA
Ga0265330_103311121	3300031235	Rhizosphere	MRNLVEPLLSLHCERCDGELRFKRIESADPVFDAEVEIFVCVKCGRAHSRRMRYDPYAAHTARSMPGGNVDQPGGAGGNRYA
Ga0265325_102765971	3300031241	Rhizosphere	MRSLVEPPPSLHCERCRGELRFKRIEPDDPAFDREIEILVCIECGRVHSHRMIYNPYAAHTTRGVARGKVDPPGEAGSNRRAM
Ga0310686_1048503111	3300031708	Soil	MRNLIQPPPSMHCERCDGELRFNRIEPDDPVFDTEVEIFVCSKCGHVHSVPVIHDPYAGHTSTSMPPGKVGQPGGSGSNRLA
Ga0316219_12906231	3300031759	Freshwater	MRNLVEPLLSLHCERCDGELRFKRIESSDPVFDAEVEIFVCVKCGRAHSRRMRYDPYAAHTARSMPRGNVDQPGGADSNRYA
Ga0302322_1039655151	3300031902	Fen	MRSLVEPPPSLHCERCRGELRFKRIEPDDRAFDREVEILVCIECGRVHSHRMIHNPYAAHTTRGVARGKVDPPGEAGSNRRAT
Ga0311301_100144969	3300032160	Peatlands Soil	MRNLTQPPPSMRCEHCNGELRFERIEPDDPVFDMEVEKFVCVKCAHAQLFRVIHDPYAAHTASNMPPGKVGLGGRVQRSR
Ga0311301_111780771	3300032160	Peatlands Soil	MRNLTQPPPSMRCERCNGELRFKRIEPDDPVFDMEVEIFVCAKCGHAHSLPVFHDPYAAHTASNMPPGKVGRSG
Ga0311301_124484352	3300032160	Peatlands Soil	DGELRFKRIEPDDPAFVMEVEIFVCSKCGHVHSLPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA
Ga0326728_100444524	3300033402	Peat Soil	MRNLVEPPSSMHCKLCDGELRFKRIEPDNPVFDMEVEIFVCLKCGHEHSRRMIYDPYIAHAARSMPPRMRVGTLL
Ga0326728_102012436	3300033402	Peat Soil	MRSLVQPSPSMHCELCYGELRFKLSEPDDPIFDMGVEIFVCTKCGHERSLRVLHDPYAAHTASSMPLGTLGQPDPSGSHRHA
Ga0326728_104317852	3300033402	Peat Soil	MRTLVRPLQSLHCELCDGELRFKRIESDDPVFDTEVEIFVCVNCGRAHSRRMIHDPYAAHTARSVPRGEAGQPGRAGSDRYA
Ga0326728_111256101	3300033402	Peat Soil	MRNLVEPPSSMHCKLCDGELRFKRIEPDDPLFYTEVEIFVCLKCGHVHSRRMIYDPYTAHAARSMPPSMLGQPGGSGSSRYH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090816

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences