Scaffold Ga0114934_10015443

Overview

Basic Information

• Taxon OID: 3300011013
• Scaffold ID: Ga0114934_10015443
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4323
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5275
  • Long. (^o): 25.4914
  • Depth (m): 482

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F030149	Metagenome / Metatranscriptome	186	N
F043149	Metagenome / Metatranscriptome	157	N
F058520	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114934_100154431	F030149	AGGAG	MTFVSVQEKLDKLVALTPDDQEKLSHYKSIVPAMIANCHKAHQSIPGWESCKPEIEAFKWFDGINIPVHGYIDLKGDKVIIEDKCKMPRRGIVKKDGTRSWFPGKLPDKPSPYNLLQVDFYWSVFEVPVYL
Ga0114934_1001544313	F058520	N/A	IEIRTQEKKSYNFLLIRPGEKKGTYILIIKDNNEDFNFSIMGSFIYNDNLPPEKLSNFGYQDRPAAYKIELKELKPLEEDVRQDKF*
Ga0114934_100154433	F043149	AGGAG	MSLRNSNVRLYNKLDKAHKKVYAAKDKGRQCVHTLKAFKEYNQLFRRIVEAENKDAKFLYT*
Ga0114934_100154438	F002495	GGAGG	MSDNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDNGNKGTILGVKGASRDGNTKFVKVFAQVGVLFKGDDKFTGEMNYSEAGGHKGLIGWINESGNILSGYKNEPRPKQAKPQSKQIPF*