Scaffold Ga0139557

Basic Information
Taxon OID	3300011010 Open in IMG/M
Scaffold ID	Ga0139557_1005029 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011010 Open in IMG/M

Scaffold ID

Ga0139557_1005029 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2785
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2785

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (50.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	41.825	Long. (^o)	-82.975	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Ontario, Canada

Coordinates

Lat. (^o)

41.825

Long. (^o)

-82.975

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F048123	Metagenome / Metatranscriptome	148	Y
F062447	Metagenome / Metatranscriptome	130	N
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10050292	F048123	GGA	MKPRYDFTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYGFSLTNSSNISKIAERMYNFRPF*
Ga0139557_10050293	F104482	N/A	MTSEEFEKAMKAQGRFVSKVYYRIRYKDMGLYILNSFQFKLLPKFFYMNGKYFTEFGFNWLGWIFEFQWNR*
Ga0139557_10050295	F032536	N/A	MSERKTFEELMRSFRFHKNPILNWFLGELSYYSHTYLNVKWGLKNKLQKLIRGYSDSDCWNLPQTIAKFILPRIKHLRKNYNSLANRHHLVMDGKIVPYVGEQDNFEFNEKLGCYKDKTTGLEISLDQKEYEYILDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD*
Ga0139557_10050296	F062447	AGGAGG	MKHKIFWEKNSRVKGVIPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGLKSFSLQDIKEVLDSVRETLNKL*
Ga0139557_10050297	F024040	GAGG	MNIYVTGHNWFAKVDIDTKKIDKSDWYNEACTRAIESVLDQEEKEGVDLKIIDYDDFGLGVILLTWDEKNSKNEDEHRVILTSNILANAGRWDDYKLIKDYEEKCKEEGL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0139557_1005029

Overview

Ecosystem & Geography

Associated Families

Sequences