Scaffold Ga0139557_1000198

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1000198
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15522
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001464	Metagenome / Metatranscriptome	689	Y
F006657	Metagenome / Metatranscriptome	367	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10001981	F006657	GGAG	MNLASLVKTKANRVLGIDASTNSVAFCLMENDVPLKWGKIELSGSDIYEKIYDAKVKMKAMLNELKSDYIVVEGAILVRSPDAVIKLSYVYGVVIAELMSTGAKV
Ga0139557_100019819	F001464	AGG	MVRKKRSGIRKKFLYFFLNDKLHKVIRSSRAKDELVAWSYLDKKRVLYSFSDVQKNMETAYTMKQAGQILGRHKVTIEEYILQGKISKPQKVYPISNPDSRWYKFMFSESSILKIHEYILEAGYSKNLPSKAELQALLKHNMILYTKTADGFVPVWKAE*
Ga0139557_10001987	F071247	GGAGG	MGSNNKIPFNPTVIKDGRIVRIRKDGSIKADLGPYKSKKKVKK*