Scaffold Ga0139299_1164989

Overview

Basic Information

• Taxon OID: 3300011007
• Scaffold ID: Ga0139299_1164989
• Source Dataset Name: Basal ice microbial communities from Matanuska glacier, Alaska, USA - MataB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Tsinghua University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2175
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacier → Basal Ice → Basal Ice Microbial Communities From Matanuska Glacier, Alaska, Usa - Matab

Source Dataset Sampling Location

• Location Name: Matanuska glacier, Alaska, USA
• Coordinates
  • Lat. (^o): 61.6558
  • Long. (^o): 147.5811

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025775	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139299_11649891	F025775	GGAG	MKQFMTFQGFPMVVVTLMIIWAWISILSVLIGSFF*