Scaffold Ga0139311_1000142

Overview

Basic Information

• Taxon OID: 3300010998
• Scaffold ID: Ga0139311_1000142
• Source Dataset Name: Rumen fluid microbial communities from healthy moose, Palmer, Alaska - F02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Ohio State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111467
• Total Scaffold Genes: 148
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 113 (76.35%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Moose Rumen → Rumen Microbial Communities From Healthy Moose, Palmer, Alaska

Source Dataset Sampling Location

• Location Name: Palmer, Alaska
• Coordinates
  • Lat. (^o): 61.5997
  • Long. (^o): -148.112

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094711	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139311_1000142132	F094711	AGGAG	MTVAVWIIAVCEVIRATQNMVQIVTIMHDTKNRDNAYSEFINSLKSTDREFVKRMLEEYNDKYGE*