Scaffold Ga0139308_100529

Overview

Basic Information

• Taxon OID: 3300010996
• Scaffold ID: Ga0139308_100529
• Source Dataset Name: ELM11109_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2771
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Source Dataset Sampling Location

• Location Name: Louisiana, Port Sulphur, Bay Sansbois east
• Coordinates
  • Lat. (^o): 29.4542
  • Long. (^o): -89.76993
  • Depth (m): 0 to .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011355	Metagenome / Metatranscriptome	292	N
F025178	Metagenome / Metatranscriptome	203	Y
F032870	Metagenome / Metatranscriptome	179	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139308_10052910	F025178	AGGAG	MNIKNTTIELDEYQKHWIHTRPYGHDIVIWSEPNKKITIKCKWPDKVRSKDGRVYDSRR*
Ga0139308_1005294	F011355	GAGG	MKSLVVIVVLLAGPDNLEKNYYPVDTEDNCAVVGQRIIEQIAKYKDNIGEQQGWYTLDDKLIVGHYCTVK*
Ga0139308_1005299	F032870	GGAGG	MSHRDAEELAAEIAYMQDDPSFHPRYNPKGKKDTDDLEARIERLEFRNEKLHKFNSKLIDEVRKLRRQLKIVVDQYRNKGAL*