Scaffold Ga0139328_119044

Overview

Basic Information

• Taxon OID: 3300010994
• Scaffold ID: Ga0139328_119044
• Source Dataset Name: ECM14MPS05_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 658
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon SG8-52-3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Source Dataset Sampling Location

• Location Name: Louisiana, Port Sulphur, Bay Sansbois east
• Coordinates
  • Lat. (^o): 29.45083
  • Long. (^o): -89.75005
  • Depth (m): 0 to .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011355	Metagenome / Metatranscriptome	292	N
F095151	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139328_1190441	F095151	AGGAG	MTDFSKYKNVTVDNDTYATITKMQTKLKKDIKLSRSQV
Ga0139328_1190443	F011355	GAGG	MKSLVVIVVLLIGPDNLEKNYYPVDTEDNCAVVGQRIIEQIAKYKDNIGEHQGWYTLDNKLVIGHYCNVK*