NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F095151

Metagenome Family F095151

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095151
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 42 residues
Representative Sequence MTDFSKYKNITVDNDTYATITKLQTKLAPDVKLSRSQVVKT
Number of Associated Samples 93
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 78.95 %
% of genes near scaffold ends (potentially truncated) 13.33 %
% of genes from short scaffolds (< 2000 bps) 14.29 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (89.524 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(25.714 % of family members)
Environment Ontology (ENVO) Unclassified
(46.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(55.238 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 24.64%    β-sheet: 0.00%    Coil/Unstructured: 75.36%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF08291Peptidase_M15_3 17.14
PF01832Glucosaminidase 2.86
PF01612DNA_pol_A_exo1 0.95
PF02675AdoMet_dc 0.95
PF00961LAGLIDADG_1 0.95
PF01370Epimerase 0.95
PF00476DNA_pol_A 0.95
PF13578Methyltransf_24 0.95
PF137592OG-FeII_Oxy_5 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 0.95
COG1586S-adenosylmethionine decarboxylaseAmino acid transport and metabolism [E] 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A89.52 %
All OrganismsrootAll Organisms10.48 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001748|JGI11772J19994_1020099All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon SG8-52-3982Open in IMG/M
3300006802|Ga0070749_10645500Not Available568Open in IMG/M
3300006802|Ga0070749_10698341All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon542Open in IMG/M
3300007234|Ga0075460_10256049All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon SG8-52-3582Open in IMG/M
3300007539|Ga0099849_1325319All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon551Open in IMG/M
3300007640|Ga0070751_1309284All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon SG8-52-3587Open in IMG/M
3300010297|Ga0129345_1112313Not Available1003Open in IMG/M
3300010413|Ga0136851_11932712All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon SG8-52-3564Open in IMG/M
3300010994|Ga0139328_119044All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon SG8-52-3658Open in IMG/M
(restricted) 3300013130|Ga0172363_10448366Not Available831Open in IMG/M
(restricted) 3300013137|Ga0172375_10042571Not Available4568Open in IMG/M
3300018080|Ga0180433_10092681All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon2631Open in IMG/M
3300020179|Ga0194134_10007469Not Available9443Open in IMG/M
3300021959|Ga0222716_10385998All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon SG8-52-3818Open in IMG/M
3300021961|Ga0222714_10172081Not Available1276Open in IMG/M
3300022167|Ga0212020_1087318Not Available522Open in IMG/M
(restricted) 3300027728|Ga0247836_1030998All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3541Open in IMG/M
(restricted) 3300027728|Ga0247836_1179219All Organisms → cellular organisms → Bacteria873Open in IMG/M
3300028189|Ga0257127_1165328Not Available600Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous25.71%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater11.43%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient4.76%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh4.76%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater4.76%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake3.81%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.81%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.86%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.86%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater2.86%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment2.86%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine2.86%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean2.86%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil2.86%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.90%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.90%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment1.90%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.95%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.95%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton0.95%
SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.95%
AquaticEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic0.95%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment0.95%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.95%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.95%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.95%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.95%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water0.95%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment0.95%
Mangrove SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment0.95%

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2022920000Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (unassembled)EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001748Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)EnvironmentalOpen in IMG/M
3300003394Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009081Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015EnvironmentalOpen in IMG/M
3300009163Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009413Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010316Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010413Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9EnvironmentalOpen in IMG/M
3300010994ECM14MPS05_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)EnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013127 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cmEnvironmentalOpen in IMG/M
3300013130 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2EnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013137 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1mEnvironmentalOpen in IMG/M
3300013138 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_12mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300014811Aquatic viral communities from ballast water - Michigan State University - AB_ballast waterEnvironmentalOpen in IMG/M
3300017732Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017756Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020084Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200mEnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020179Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0mEnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300020207Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101406AT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020246Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105)EnvironmentalOpen in IMG/M
3300020385Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)EnvironmentalOpen in IMG/M
3300020550Freshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020553Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021091Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40mEnvironmentalOpen in IMG/M
3300021379Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300022063Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022167Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300023119Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaGEnvironmentalOpen in IMG/M
3300023170Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaGEnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025300Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)EnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025822Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300025896Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027586Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027728 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14mEnvironmentalOpen in IMG/M
3300027760Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027764Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027917Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)EnvironmentalOpen in IMG/M
3300028189Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_135mEnvironmentalOpen in IMG/M
3300028569 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8mEnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300033994Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046EnvironmentalOpen in IMG/M
3300034018Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
QL_na_63299102022920000Saline WaterMTDKSKYSNVTVDNQTYAIITKLQTKLVPEVTLSRSQVIKTI
DelMOWin2010_1003564013300000117MarineMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSR
JGI11772J19994_101208613300001748Saline Water And SedimentMTDFSKYKNITVDNETYATVTRLQTKMTPDVKLSR
JGI11772J19994_102009953300001748Saline Water And SedimentMTDFSKYKNITVDKDTYATLQMQTKLADNVKLSRSQVVKTLVQE
JGI25907J50239_103245143300003394Freshwater LakeMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSRSQVIKLS*
Ga0070749_1064550033300006802AqueousMTDFSKYKNVTVDNDTYSIITKLQTKLKDDVKLSRSQVVKTLV
Ga0070749_1069834113300006802AqueousMTDRSKYSNVTVDNKTYEIITKLQTKLIPDMKISRSQ
Ga0070746_1021048413300006919AqueousMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRSQ
Ga0098036_107609943300006929MarineMTDFTRYKNVTVDKKTYETITKMQTKLTPDTKLSRSQVVTSLVNE
Ga0075460_1020814013300007234AqueousMTDFSKYKNVTVDNDTYSIITKLQTKLKDDVKLSRSQVVKTLVTE
Ga0075460_1025604913300007234AqueousMTDFSKYKNITVDNETYVTVTKLQTKMTPDVKLSRSQVI
Ga0070753_109886663300007346AqueousMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRSQVVKT
Ga0099849_122093543300007539AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVK
Ga0099849_122330413300007539AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVKTLV
Ga0099849_132531913300007539AqueousMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISR
Ga0099848_126069133300007541AqueousMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISRSQVIKQ
Ga0099846_127701333300007542AqueousMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISRSQVIKQII
Ga0070751_130928413300007640AqueousMTDFSKYKNITVDNETYVTVTKLQTKMTPDVKLSRSQVIK
Ga0099850_134096533300007960AqueousMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISRSQV
Ga0114363_107118743300008266Freshwater, PlanktonMTDFSKYKNITVDNDTYAIVTKLQTKLKKDIKLSRSQVIKTL
Ga0102960_126661323300009000Pond WaterMTDFNKYKNVTVDNETYATITKLQTKLKDDVKLSRSQVVKTLVTEKAR
Ga0105098_1045054143300009081Freshwater SedimentMTDFNKYKNITVDNDTYGFVTKLQTKLKKDIKLSRSQ
Ga0114970_1034963113300009163Freshwater LakeMTDFSKYKNITVDNDTYAIVTKLQTKLKSDVKLSRSQ
Ga0114975_1069383813300009164Freshwater LakeMTDFSKYKNITVDNDTYGLVTRLQTKLKRDVKLSRSQVIKTLVNEK
Ga0114902_113871913300009413Deep OceanMTDFSKYKNITVDNDTYATITKLQTKITQDVKLSRSQVVKTL
Ga0115569_1051716733300009497Pelagic MarineMTDFTKYKNITVDHATYETITKLQTKLTTDVKLSRSQVVK
Ga0129345_111231343300010297Freshwater To Marine Saline GradientMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISRS
Ga0129351_111346363300010300Freshwater To Marine Saline GradientMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVKTLVQ
Ga0136655_107013263300010316Freshwater To Marine Saline GradientMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVV
Ga0129333_1087259923300010354Freshwater To Marine Saline GradientMTDFSKYKNITVDNDTYAIVTKLQTKLKSDVKLSRSQVIK
Ga0129333_1159163033300010354Freshwater To Marine Saline GradientMTDFSKYKNVTVDNDTYTIITKLQTKMTPDVKLSRSQVVKTL
Ga0136851_1193271233300010413Mangrove SedimentMTDFSKYKNITVDKDTYGTITKMQTKLAENVKLSRS
Ga0139328_11904413300010994SedimentMTDFSKYKNVTVDNDTYATITKMQTKLKKDIKLSRSQV
(restricted) Ga0172367_1015253833300013126FreshwaterMTDFSKYKNITVDNQTYAIVTKLQTRLKRDVKLSRSQVVKTLVKEKARNLNGSLK*
(restricted) Ga0172365_1023266043300013127SedimentMTDFNKYKNITVDNHTYAIVTKLQTKLKKDVKLSRSQVI
(restricted) Ga0172363_1044836613300013130SedimentKVKMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK*
(restricted) Ga0172372_1091617023300013132FreshwaterMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIK
(restricted) Ga0172375_1004257133300013137FreshwaterMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK*
(restricted) Ga0172371_1083619133300013138FreshwaterVKMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK*
Ga0177922_1125781933300013372FreshwaterMTDFNKYKNITVDNDTYATVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK*
Ga0119960_103509313300014811AquaticMTDFNKYRNITVDKDTYGIVTKLQTKLKEDIKLSRSQVIKTLVNESVRS*LGN
Ga0181415_113177513300017732SeawaterMTDFTKYKNITVDHATYETITKLQTKLTTDVKLSRS
Ga0181400_116831313300017752SeawaterMTDFSKYKNITVDNDTYATITRLQTKITPDVKLSRSQVVKTL
Ga0181382_114902313300017756SeawaterMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRS
Ga0181382_118054413300017756SeawaterMTDFTRYKNVTVDKKTYETITKMQTKLTPDTKLSRSQ
Ga0181386_106481323300017773SeawaterMTDFTKYKNITVDHATYETITKLQTKLTTDIKLSRSQVVKTLVKEKARELNGKLSK
Ga0169931_1054709213300017788FreshwaterNMTDFSKYKNITVDNQTYAIVTKLQTRLKRDVKLSRSQVVKTLVKEKARNLNGSLK
Ga0169931_1077262033300017788FreshwaterMTDFSKYKNITVDNQTYAIVTKLQTRLKRDVKLSRSQVV
Ga0181577_1093793813300017951Salt MarshMTDFNKYKNITVDNETYDNVTKLQTAMVPDMKISRSAVVKS
Ga0180433_1009268163300018080Hypersaline Lake SedimentMTDFSKYKNITVDKECYAVITKLQTKLKEDVKLSRSQVVKTLVTEKARRLNGKLDKK
Ga0181592_1082858933300018421Salt MarshMKGKRMTDFSKYKNITVDNATYETITKLQTKLATDVKLS
Ga0181359_123265233300019784Freshwater LakeMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSRSQVIKTLV
Ga0194110_1083694233300020084Freshwater LakeMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGKLTK
Ga0211735_1004653623300020162FreshwaterMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSRSQVIK
Ga0194134_1000746973300020179Freshwater LakeMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK
Ga0211731_1127696533300020205FreshwaterMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSRSQVIKTLVNE
Ga0181570_1032829933300020207Salt MarshMTDFSKYKNITVDNATYETITKLQTKLATDVKLSRSQ
Ga0211707_102524313300020246MarineMTDFSKYKNITVDNDTYAIITKLQTQIAPDVKLSRSQVVKTLAKEKAKKL
Ga0211677_10012542113300020385MarineMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRSQV
Ga0208600_101018353300020550FreshwaterMTDFSKYKNITVDNDTYAIVTKLQTKLKNDVKLSRS
Ga0208855_101035813300020553FreshwaterMTDFSKYKNITVDNDTYAIVTKLQTKLKSDVKLSRS
Ga0194133_1054114913300021091Freshwater LakeMTDFNKYKNITVDNETYSVVTKLQTKLKKDVKLSRSQVVKTLVKEKARK
Ga0213864_1026285453300021379SeawaterMTDYTKYKNVTVDNKTYDTITKMQTKLKSDVKLSRS
Ga0222716_1038599843300021959Estuarine WaterMTDFSKYKNITVDKDTYGTITKMQTKLADNVKLSR
Ga0222714_1014564853300021961Estuarine WaterSKYSNVTVDNQTYAIITKLQTKLVPEVTLSRSQVIKTIVQEKAKTLNGRLK
Ga0222714_1017208163300021961Estuarine WaterMTDFSKYKNITVDNDTYAVVTKLQTKMTPDVKLSRS
Ga0222713_1079225113300021962Estuarine WaterMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSRSQVIKTLVNEK
Ga0212029_101482653300022063AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVKTLVQE
Ga0212024_109836233300022065AqueousMTDFSKYKNVTVDNDTYATITKMQTKLKKDIKLSRSQVVK
Ga0212020_108731833300022167AqueousMTDFSKYKNVTVDNDTYSIITKLQTKLKDDVKLSR
Ga0196891_107565723300022183AqueousMTDFTRYKNVTVDKKTYETITKMQTKLTPDTKLSRSQVVT
Ga0181354_122912923300022190Freshwater LakeMTDFSKYKNITVDNDTYAIVTKLQTKLKSDVKLSRSQVIKTLVN
Ga0196905_113182213300022198AqueousMTDFSKYKNITVDNETYATVTRLQTKMTPDVKLSRSQVIKTLVKE
Ga0196901_107159863300022200AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVKTL
Ga0255762_1030126943300023119Salt MarshMKGKRMTDFSKYKNITVDNATYETITKLQTKLATDV
Ga0255761_1040445243300023170Salt MarshMTDFSKYKNITVDNETYATVTRLQTKMTPDVKLSRSQVIKTLVK
Ga0208919_105375713300025128MarineMTDFSKYKNITVDNDTYATITKLQTKIAPDVKLSRSQ
Ga0209645_108412013300025151MarineMTDFSKYKNITVDNDTYATITKLQTKLAPDVKLSRSQVVKT
Ga0208814_113082933300025276Deep OceanMKERLYKMTDFSKYKNITVDNNTYATITKLQTKIA
Ga0208181_107578413300025300Deep OceanMTDYNKYKNVTVDNKTYDTITKMQTKLTPDTKLSRSQVVT
Ga0208161_107964313300025646AqueousMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISRSQVIKQI
Ga0208162_108101253300025674AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRS
Ga0208019_111150943300025687AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVKT
Ga0208767_100648613300025769AqueousMTDFSKYKNVTVDNDTYTTITKLQTKLKDDVKLSRSK
Ga0209714_117942933300025822Pelagic MarineMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRSQVV
Ga0208547_115002213300025828AqueousMTDKSKYSNVTVDNKTYEIITRLQTKLIPDMKISRSQ
Ga0208644_113309463300025889AqueousMTDFSKYKNITVDNETYATVTRLQTKMTPDVKLSRSQVIKTLVKEK
Ga0208916_1040637633300025896AqueousMTDFSKYKNVTVDNDTYAKLTKLQTKMVNDDLKLSRSQIVK
Ga0208966_107216943300027586Freshwater LenticMTDFSKYKNITVDNDTYGLVTKLQTKLKRDIKLSR
(restricted) Ga0247836_103099823300027728FreshwaterMTDFNKYKNITVDNDTYATVTKLQTKLKRDIKLSRSQVIKTLVKEKARLLNGSLTK
(restricted) Ga0247836_109265923300027728FreshwaterMTDFNKYKNITVDNDTYTTVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLSK
(restricted) Ga0247836_117921933300027728FreshwaterMTDFNKYKNITVDNDTYSTVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK
Ga0209598_1027149913300027760Freshwater LakeMTDFSKYKNITVDNDTYGLVTRLQTKLKRDVKLSRSQVIKT
Ga0209134_1010369243300027764Freshwater LakeMTDFSKYKNITVDNDTYAIVTKLQTKLKNDIKLSRSQVIKTLVNEK
Ga0209536_10117970013300027917Marine SedimentMTDFTKYKNVTVDNKTYDVITKMQTKLTPDIKLSRSQ
Ga0257127_116532833300028189MarineIGKNIITERLYKMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRSQVVKTLVNEKARKLNGRLSK
(restricted) Ga0247843_114530733300028569FreshwaterMTDFNKYKNITVDNDTYSTVTKLQTKLKRDVKLSRSQVIKTLVKEKARL
Ga0307376_1029851813300031578SoilMTDKSKYSNVTVDNQTYAIITKLQTKLVPEVTLSR
Ga0307376_1065425533300031578SoilMTDKSKYSNITVDNKTYDIITKLQMKLIPEMKISRSQVVKQ
Ga0307375_1019840253300031669SoilMTDKSKYSNITVDNKTYDIITKLQMKLIPKMKISRSQV
Ga0315284_1055040913300032053SedimentMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSR
Ga0315902_1127461913300032093FreshwaterMTDFSKYKNITVDNDTYAIVTKLQTKLKKDIKLSRSQ
Ga0334996_0504577_1_1203300033994FreshwaterMTDFSKYKNITVDNDTYAIVTKLQTKLKKDIKLSRSQVIK
Ga0334985_0209357_2_1063300034018FreshwaterMTDFSKYKNITVDNDTYAIVTKLQTKLKNDVKLSR
Ga0348336_082781_1_1083300034375AqueousMTDFSKYKNITVDKDTYGTITKMQTKLADNVKLSRS


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