NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139327_104010

Scaffold Ga0139327_104010


Overview

Basic Information
Taxon OID3300010992 Open in IMG/M
Scaffold IDGa0139327_104010 Open in IMG/M
Source Dataset NameELM11109_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1050
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Source Dataset Sampling Location
Location NameLouisiana, Port Sulphur, Bay Sansbois east
CoordinatesLat. (o)29.4542Long. (o)-89.76993Alt. (m)Depth (m)0 to .02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004134Metagenome / Metatranscriptome451Y
F065729Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0139327_1040102F004134AGAAGMTEHPTKDWEWEDTAEVAFQEWFNGEYGNFTFRNEWFFGDCEVEDVNTRKDLMTKWLHSAFLTGYNTGRCSKTDD*
Ga0139327_1040103F065729GAGGMKKLEFRPVTITYVRTMMLTPTAETFEDWDVEPTQESVYDWAVEEFLTTIEEEAKDGEWRNFTIITEDQPLVEVEWGEEDYD*

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