Scaffold Ga0139327_104010

Overview

Basic Information

• Taxon OID: 3300010992
• Scaffold ID: Ga0139327_104010
• Source Dataset Name: ELM11109_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1050
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Source Dataset Sampling Location

• Location Name: Louisiana, Port Sulphur, Bay Sansbois east
• Coordinates
  • Lat. (^o): 29.4542
  • Long. (^o): -89.76993
  • Depth (m): 0 to .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004134	Metagenome / Metatranscriptome	451	Y
F065729	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139327_1040102	F004134	AGAAG	MTEHPTKDWEWEDTAEVAFQEWFNGEYGNFTFRNEWFFGDCEVEDVNTRKDLMTKWLHSAFLTGYNTGRCSKTDD*
Ga0139327_1040103	F065729	GAGG	MKKLEFRPVTITYVRTMMLTPTAETFEDWDVEPTQESVYDWAVEEFLTTIEEEAKDGEWRNFTIITEDQPLVEVEWGEEDYD*