3300010992: ELM11109_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)

Overview

Basic Information

• IMG/M Taxon OID: 3300010992
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121658 | Gp0160595 | Ga0139327
• Sample Name: ELM11109_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
• Sequencing Status: Permanent Draft
• Sequencing Center: Molecular Research LP (MR DNA)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43187297
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → miscellaneous Crenarchaeota group archaeon SMTZ1-55	1
Not Available	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Cwc Coastal Marshes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → freshwater marsh → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Louisiana, Port Sulphur, Bay Sansbois east
• Coordinates
  • Lat. (^o): 29.4542
  • Long. (^o): -89.76993
  • Alt. (m): N/A
  • Depth (m): 0 to .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004134	Metagenome / Metatranscriptome	451	Y
F008068	Metagenome / Metatranscriptome	339	Y
F011752	Metagenome / Metatranscriptome	287	Y
F012534	Metagenome / Metatranscriptome	280	N
F028664	Metagenome	191	Y
F045718	Metagenome	152	N
F050784	Metagenome	145	Y
F050864	Metagenome	144	Y
F056324	Metagenome / Metatranscriptome	137	Y
F065729	Metagenome / Metatranscriptome	127	N
F076877	Metagenome	117	Y
F086333	Metagenome / Metatranscriptome	111	Y
F086602	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0139327_100042	All Organisms → cellular organisms → Bacteria	4374
Ga0139327_102141	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → miscellaneous Crenarchaeota group archaeon SMTZ1-55	1296
Ga0139327_103621	Not Available	1084
Ga0139327_104010	All Organisms → Viruses → Predicted Viral	1050
Ga0139327_105051	Not Available	973
Ga0139327_111869	All Organisms → cellular organisms → Bacteria	738
Ga0139327_112789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	720
Ga0139327_116369	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	663
Ga0139327_124623	Not Available	580
Ga0139327_125546	All Organisms → cellular organisms → Bacteria → Proteobacteria	573
Ga0139327_125804	Not Available	571
Ga0139327_132949	Not Available	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0139327_100042	Ga0139327_1000422	F012534	MTQYEKDIIWAASQFLYDDLPEDYEKWSDEKFFKFLEDNAWQPFDNYSGQWLWAHIQDLAVSVRKYAQEN*
Ga0139327_102141	Ga0139327_1021412	F008068	MEMDEIIVAGEPCLVIRSPLIPRTLLCNSLLQPLLSRLKGSEEFVAFVSEPCVAPQGLDVVLVTAFWPRCVFDQASEGSVSRPLQTIKPQHLMLVERELYMKLTKKSCLFGDFLDSLLLHNEDRRKVSELLSKVRRWIKNNKSYGLFFLTDVRGTEDFIDQTAAIFEIVVRAEVETEQDEPLLRFTIMKHPNIAKIDKKIEVAFEKGQPKRRRG*
Ga0139327_103621	Ga0139327_1036211	F050864	VLRKGKTFLCSGILILLALALFSGCSLSEKTSAEPVMPEPLEFTYSVSVSAVPIQISSGNLHWHKELPNDSYTLEDMALEIYNFGDFDIPVAQLEITVDEDVSLFNIDQIIAGGARENIVLQPMMEGYDGGIHRVYVALLDDNGGVLYRNEGEDIGPLEPEPGTGSWHPMPS*
Ga0139327_104010	Ga0139327_1040102	F004134	MTEHPTKDWEWEDTAEVAFQEWFNGEYGNFTFRNEWFFGDCEVEDVNTRKDLMTKWLHSAFLTGYNTGRCSKTDD*
Ga0139327_104010	Ga0139327_1040103	F065729	MKKLEFRPVTITYVRTMMLTPTAETFEDWDVEPTQESVYDWAVEEFLTTIEEEAKDGEWRNFTIITEDQPLVEVEWGEEDYD*
Ga0139327_105051	Ga0139327_1050511	F011752	MTATTEDIVAHVREWSLDRAADKSISKTDARAILAEFYEWIEPDGDELEIVSLEPED*
Ga0139327_111869	Ga0139327_1118691	F086602	PDSVTQWEQLQETDFDSEPFVFDKHADLPVEERPAYRLADTEMTINVWEKQKVVDTVTLRAIVVHDPQGEKPAERWPVVLLTDDRQIEARDLLNEFGDHWGQEFGHRIGKHDLYLDIVPQGYVLRTQRDDQGQLHREVEYDQTALFLSAWLRCLVFNLMSRFAQALGGEYAKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDELQPLLDRLNAKRTPLPWLNNLVVQFSIAQDEPLHPLT
Ga0139327_112789	Ga0139327_1127892	F050784	MKELWTGPEFTRRNRGRMGIMGSIATLLGVAFAIVGIISEASLTLLGLYPTSWYLLAIASLVFSLGCWLGWAVGIYLHAKETGSNE*
Ga0139327_116369	Ga0139327_1163691	F056324	MKGKAVILLMILSFMAAFSGCAGSKTYLMDVRYVPGEKAPPSSKTVGICPFEDARKDKGKETIGVRYRPGKNVDLLNLKGISLSQSVTQAVEDYFAEKGFEVTDCKGWDKSAEGLDGLPKDLSLVIGGKIDSFMVEAKSGVSITNIRYTVKLEALIGKIGERKVVTRTIESSPTRKKVGFDPDKVKAELN
Ga0139327_124623	Ga0139327_1246232	F045718	MIGTDLKVTLSDGSEHTVTVSYSVACAWEDHHPGQAMEAMVRDVKFKQIAYLAYEALRKGGVTVKVWPQFIDTLGDVDFIPKARKKDKQPD*
Ga0139327_125546	Ga0139327_1255461	F086333	MRMLRETESRVDFFKRGAGRNANEREKELKDNKMNIQPQNKLINNVKNRFKNIIDGILIRYDNYVYYKQLERFFKDNRTVLEKLKDKVNLAIACLSKNISKYVGSNNLDGHPHSLFIDGVKDGLLRRDE
Ga0139327_125804	Ga0139327_1258041	F076877	MKEFLNCALLLSGETMKSFLERLAGGRCSFRGLGMGETAAPSLSKGMRRGKNSPVNKSLKKPAREPWN*
Ga0139327_132949	Ga0139327_1329491	F028664	MKENSKILVGGQALRNLGHDRHTNDTDYLINDLSTKDAFITSDAVDYLNANGNKFFAEIFKLEAGNEQATPQSLFELKAYAFVQHCQNFNWAKADACEYDLKFLKREFGCRPQIVKKY