Scaffold Ga0139327_102141

Overview

Basic Information

• Taxon OID: 3300010992
• Scaffold ID: Ga0139327_102141
• Source Dataset Name: ELM11109_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1296
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → miscellaneous Crenarchaeota group archaeon SMTZ1-55 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Source Dataset Sampling Location

• Location Name: Louisiana, Port Sulphur, Bay Sansbois east
• Coordinates
  • Lat. (^o): 29.4542
  • Long. (^o): -89.76993
  • Depth (m): 0 to .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008068	Metagenome / Metatranscriptome	339	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139327_1021412	F008068	AGGAG	MEMDEIIVAGEPCLVIRSPLIPRTLLCNSLLQPLLSRLKGSEEFVAFVSEPCVAPQGLDVVLVTAFWPRCVFDQASEGSVSRPLQTIKPQHLMLVERELYMKLTKKSCLFGDFLDSLLLHNEDRRKVSELLSKVRRWIKNNKSYGLFFLTDVRGTEDFIDQTAAIFEIVVRAEVETEQDEPLLRFTIMKHPNIAKIDKKIEVAFEKGQPKRRRG*