Scaffold Ga0139307_113018

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0139307_113018

Scaffold Ga0139307_113018

Overview

Basic Information
Taxon OID	3300010991 Open in IMG/M
Scaffold ID	Ga0139307_113018 Open in IMG/M
Source Dataset Name	ELM10016_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	671
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Source Dataset Sampling Location
Location Name	Louisiana, Port Sulphur, Bay Sansbois east
Coordinates	Lat. (^o)	29.45497	Long. (^o)	-89.758933	Alt. (m)		Depth (m)	0 to .02
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088283	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139307_1130182	F088283	GAGG	MNTKALLLFAALGACSGCATGPDVTGTYSPSCVAFEGNTIELSGGRFTWDKFTDEVTVDDAGNEVDPFPGFPVRGTYTIEADVVSLTTDVGELAAELHLVRRPDQVYLLTAAEFDAWQRDGTVPKCALLLGAGE*

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