3300010991: ELM10016_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp)

Overview

Basic Information

• IMG/M Taxon OID: 3300010991
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121658 | Gp0160590 | Ga0139307
• Sample Name: ELM10016_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp)
• Sequencing Status: Permanent Draft
• Sequencing Center: Molecular Research LP (MR DNA)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15184819
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Leptocylindrales → Leptocylindraceae → Leptocylindrus → Leptocylindrus aporus	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Cwc Coastal Marshes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → freshwater marsh → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Louisiana, Port Sulphur, Bay Sansbois east
• Coordinates
  • Lat. (^o): 29.45497
  • Long. (^o): -89.758933
  • Alt. (m): N/A
  • Depth (m): 0 to .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000860	Metagenome / Metatranscriptome	857	Y
F015864	Metagenome / Metatranscriptome	251	Y
F017955	Metagenome / Metatranscriptome	237	Y
F082762	Metagenome / Metatranscriptome	113	Y
F088283	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0139307_100009	All Organisms → cellular organisms → Eukaryota	3697
Ga0139307_101014	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Leptocylindrales → Leptocylindraceae → Leptocylindrus → Leptocylindrus aporus	1220
Ga0139307_103708	Not Available	899
Ga0139307_113018	Not Available	671
Ga0139307_115587	Not Available	644

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0139307_100009	Ga0139307_1000093	F082762	TGINITNSTNPIMLTKNITLTILDCCAPPPVRLIAHCVSAGALIGASIAAPNPVTIGSSIHILTEIYENC*
Ga0139307_101014	Ga0139307_1010141	F017955	MNATVHTTLRATPTQLVFGRDAMLNVSFEADWQFIKERKQRRILQNNRKENATRTPHTYQVGDRVMIKEGQGRKHGRDPYLGPFTVTQVNDNGTVRLVKVATGGAVHETWHAHPESVSVHGLITRVETTTASEETVRV
Ga0139307_103708	Ga0139307_1037082	F000860	MLPKILSQDSDYDEWCEEEILNASREAAESDQFMFGAYDYKKEWL
Ga0139307_113018	Ga0139307_1130182	F088283	MNTKALLLFAALGACSGCATGPDVTGTYSPSCVAFEGNTIELSGGRFTWDKFTDEVTVDDAGNEVDPFPGFPVRGTYTIEADVVSLTTDVGELAAELHLVRRPDQVYLLTAAEFDAWQRDGTVPKCALLLGAGE*
Ga0139307_115587	Ga0139307_1155871	F015864	MTDFHYSTGEELEQFLYEKCREDPDLLATIISEYVCSLSDNKLIELEDFLTNNFGDD