Scaffold Ga0139307_103708

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0139307_103708

Scaffold Ga0139307_103708

Overview

Basic Information
Taxon OID	3300010991 Open in IMG/M
Scaffold ID	Ga0139307_103708 Open in IMG/M
Source Dataset Name	ELM10016_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	899
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Source Dataset Sampling Location
Location Name	Louisiana, Port Sulphur, Bay Sansbois east
Coordinates	Lat. (^o)	29.45497	Long. (^o)	-89.758933	Alt. (m)		Depth (m)	0 to .02
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000860	Metagenome / Metatranscriptome	857	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139307_1037082	F000860	GGAGG	MLPKILSQDSDYDEWCEEEILNASREAAESDQFMFGAYDYKKEWL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.