Scaffold Ga0137575_10000433

Overview

Basic Information

• Taxon OID: 3300010970
• Scaffold ID: Ga0137575_10000433
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8804
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F012975	Metagenome / Metatranscriptome	275	Y
F037227	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137575_1000043312	F000473	N/A	MEEDKKMTFIDKSKDHFKFGVNEWTGEPKKPVFYTDEMRKRVREIPKPTYDLLMDVVMYPDFLAIRLYEDNFLQFDGNKKEMVIEYVSKVKRLIESYGVRCELEGSPSERVL*
Ga0137575_1000043314	F012975	AGG	MLNLTLKGVEVFIDKSKTKNQESFWDNYDLVIWKQDQSGYTSIKGMFRKNSWGLAEKISVDSHGIWKLPTKYVKHFR*
Ga0137575_100004334	F037227	GGAGG	MANMTVLEGIIEDVSVELYQKLWNAIPVEEQTEDSSKAIGLNSRETTLFVIQSFMNKFNAAAEELKDK*