Scaffold Ga0137675_1003256

Overview

Basic Information

• Taxon OID: 3300010966
• Scaffold ID: Ga0137675_1003256
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1189
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F010469	Metagenome / Metatranscriptome	303	Y
F068572	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137675_10032561	F010469	AGGCGG	MNVIPPVVDTNNIRYADFVRVTTPDAVYRFASTASALTVPAVDSQPFDALGVLIKVGDTQRDIKSTANESTFTLVGIDTAALGWVLGNQIKGSQIEAWKGFFNTDGELLTSGGQGGLHQFFNGYINS
Ga0137675_10032562	F000934	GGA	MSLNQVLAISESVGINDQRFVGQMVSRNQRISTSEIITVVPFAFEMKPMNYLYYGQNRSLLNSLRIPDKSLIQYLNFGTTGWASYIAYQGDMTSGEISTCQWQTSSANKVLVLGSLPTMPSTEYIVKAGDFCQVGLYAYIATADVLRGSGSTVSIPVHRNLISTLSTPVNAVIGEYGTTVSMGGTTYTGITFQVILRDYPTYTLVPCVANDSFIQWTGSFRAFEAVL*
Ga0137675_10032563	F068572	N/A	GPYIASMQAIDTQSGIQFLAKNKMTIWSMNQSANRSIPAGR*