Scaffold Ga0137675_1000054

Overview

Basic Information

• Taxon OID: 3300010966
• Scaffold ID: Ga0137675_1000054
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10697
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002935	Metagenome	519	Y
F006385	Metagenome / Metatranscriptome	374	Y
F007691	Metagenome / Metatranscriptome	346	Y
F011487	Metagenome / Metatranscriptome	290	Y
F021757	Metagenome	217	Y
F038479	Metagenome / Metatranscriptome	166	Y
F045756	Metagenome	152	Y
F048982	Metagenome / Metatranscriptome	147	Y
F081245	Metagenome / Metatranscriptome	114	Y
F083720	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137675_10000541	F038479	AGGTGG	MTTLNTYKGLSLDQKITIAAQMVADGKLVSFRGASADTYIKVQKLANKIKQD
Ga0137675_100005410	F021757	AGGTGG	MMTRKDYVAVAEILSSYKELIGDEFTYHDLVDDFGSMFEADNPNFKFEVFREACEK*
Ga0137675_100005411	F006385	GAGG	MILDTGTLIGITIALSGSVGMMVAFWNRTIQLEKEIRRLQVALRTERIKK*
Ga0137675_100005412	F083720	N/A	VGTNYHSRTLQGEIVSAEPHPHAVWYEGCDTYLVEVAPNSGYNNFGKRTYRTIAVKVGA*
Ga0137675_100005413	F000447	AGG	MGYVEIFRIDNEGAGWIDLAQANEDEKFNIELGLLNEGALFTTKEAN*
Ga0137675_100005418	F011487	AGGAG	MANMYEAISDEFYDEYYSTVCPSCKENSVDEYEEKCTHCLLEEMSAMYNEDIALEMSLGLDY*
Ga0137675_100005424	F002935	AGGA	MRNRSKGYIGQIVDGKKLAVIANGIYNLQYSSDFSECTVDNLLFITLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVETIKECLTDQTEDISDYIRVFGDRLDNNCSLWQSKMSVVEDMIVI*
Ga0137675_100005426	F007691	GAG	MNTIDDLINEIYEDNYSHLEFDANMGGEDCDCHIHITLNTMAKYAGIEVG*
Ga0137675_10000543	F081245	N/A	MGYVKSLELEYYLADEPEDSLATMLDELIKKGEYK*
Ga0137675_10000546	F045756	AGGAG	MTKYNVIVSYVCEAENELSAVFALNKTLMPLSENELEKFNAFHIEEIVE*
Ga0137675_10000547	F048982	AGGAG	MSIELRDVLSMSRQIRGNDYDSGTHYFLGYLWACTPDEEKMRIAKVFANDLAELGKDNE*