Scaffold Ga0137675_1000004

Overview

Basic Information

• Taxon OID: 3300010966
• Scaffold ID: Ga0137675_1000004
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56483
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (81.32%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016519	Metagenome / Metatranscriptome	246	N
F041756	Metagenome	159	N
F051078	Metagenome / Metatranscriptome	144	N
F078007	Metagenome / Metatranscriptome	117	N
F085678	Metagenome	111	Y
F086725	Metagenome	110	N
F088784	Metagenome / Metatranscriptome	109	Y
F091938	Metagenome / Metatranscriptome	107	N
F105044	Metagenome	100	N
F105161	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137675_100000443	F016519	N/A	LNKAIKLSGMGGWSINMTHCLWQVRNGNGDLTVATSITLKDSMATKRFDKELHDTYDKFGRDVVKSYVSSFWNMEARDNPDRYGIDLHLYKEDLLVGYAEVEVRLSWKTVEFPYEDLNVPARKKKLLTQELPTYFFSVNKDGTALFHCEAAAVLASEIKESRNKYVYQGELFYKVSLDRLTHIVLSTAG*
Ga0137675_100000444	F091938	GGGGG	MIVVEIRQGIGLDIEYNENICHIIDDGGDVDKLFAYSGILIKLPFISIYIGEFDEIGSLINSDKSTGE*
Ga0137675_100000448	F085678	AGGA	MNVEMIDEHEDGSATFTFDLNWEERNILLNLGIITAIKMGIEEGTKYVGNTDMGNTGCGESDSVHGEGEQPREPEQS*
Ga0137675_100000453	F051078	AGGA	MDSSTNLKPNDIALILRPTIVDGEYTKSFQVLVSGFGPLTISQDDADNLVGMAMILAATVQYMQEDEKLADKLVSYCGKVFADVGDFAYNPDHDSFSDGSFTVDTKTVGGMQ*
Ga0137675_100000462	F041756	AGG	MKLHELENLIMAAWITKEDIDSILWVLMDREKKPDEDELANLLIGLHSLHDARMTKLFQAYDTVLKTNKITYKGYDFPKNTSTL*
Ga0137675_100000475	F105161	AGG	MLSDVDIRDFDKQPVTPLFSVKPKSYIQMPNTGVVFYFDHIDGMYSYCLDMFGDTIHLAAWVDVIPLVKKTD*
Ga0137675_100000477	F086725	AGG	MYKIQARLRDKWHCLEFDVTDSGDYKPKRYHTLNDASLALERYLDGLFFANKEQVDFGNFRIVKE*
Ga0137675_100000484	F088784	GGAG	MERIMKAKYKGICCKTGAPINVGDIVVYDTVTKKVWLTVDEDRMVMHVCSR*
Ga0137675_10000049	F078007	AGG	MMATKKAFKPCEECSSPAKCKAAGKCMAKEGKGKAAIAIMIGMPKKMNKGGMAKKGKC*
Ga0137675_100000490	F105044	AGGA	MVLTTPEQINAYRLRVLRQGLKAEMRGMRLTAKGQTCYAILKSMGYKGTKQQVFDAVTIDSENALAEAMAS*