Scaffold Ga0138308_107274

Overview

Basic Information

• Taxon OID: 3300010965
• Scaffold ID: Ga0138308_107274
• Source Dataset Name: Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7501
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location

• Location Name: Lake Cadagno, Switzerland
• Coordinates
  • Lat. (^o): 46.5499
  • Long. (^o): 8.711

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F066776	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138308_10727411	F000671	AGGA	MEKVLCYCCNKTKNKLIARKSSLLSINLLMCETCIVSKFEPRWVVILSGRQFGPEVVREYVIKKRYCGNEISASELLV*
Ga0138308_1072744	F014140	N/A	MNKYSIKLDIEVEVEAFNAEDAQEYIHDIFNIDDEIKKVNIVKITNK*
Ga0138308_1072747	F066776	GAG	MLHLTEKGVEIFIKKSQTQRQESFWNNYDLVIWKKDNGGYSDIKGMFRKNAWGKAEKISANKNGIWMLPKRYVKYFK*
Ga0138308_1072749	F011394	N/A	MFIDKNKNHFEHGINQWTGEPIKPVFYTKEMAKKVREIKSPAPDLRLDMVKYPEFIAIRLYEDNFSKYDGSMKMRVIEYVEMVKKIVESYGVRCELEGVPSGRNT*