NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138905_1287668

Scaffold Ga0138905_1287668


Overview

Basic Information
Taxon OID3300010947 Open in IMG/M
Scaffold IDGa0138905_1287668 Open in IMG/M
Source Dataset NameTermite gut microbial communities - laboratory nests. Combined Assembly of Gp0151227, Gp0151152, Gp0151149, Gp0151146
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Luxembourg, Luxembourg Institute of Science and Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)764
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut → Multi-Omic Termite Study

Source Dataset Sampling Location
Location NameFrance
CoordinatesLat. (o)48.913957Long. (o)2.485499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008365Metagenome334Y

Sequences

Protein IDFamilyRBSSequence
Ga0138905_12876682F008365GGAMDPLITEAIELEMYPYNMKRDDGLNMGKSWKPLLHLLKERRQPPGTQ*

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