Scaffold Ga0139176_100001

Overview

Basic Information

• Taxon OID: 3300010942
• Scaffold ID: Ga0139176_100001
• Source Dataset Name: Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain - replicate C3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Autonomous University of Barcelona
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 122566
• Total Scaffold Genes: 160
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (9.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Viral Communities And Vesicles From Water Purifying Plant In Alicante,Spain

Source Dataset Sampling Location

• Location Name: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.34
  • Long. (^o): -0.48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F003038	Metagenome / Metatranscriptome	511	Y
F004953	Metagenome / Metatranscriptome	417	Y
F006840	Metagenome / Metatranscriptome	363	Y
F012010	Metagenome / Metatranscriptome	284	Y
F054451	Metagenome / Metatranscriptome	140	Y
F071260	Metagenome / Metatranscriptome	122	Y
F091487	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139176_100001101	F000716	N/A	VEKLKQEIRNYQLNAGQTYMQYETDRYSSYQNYLYKRALYGLDALSQEELANICSKKKQRIISVYKRAQIVLNTFKQRLTIAYSNHIFETFFPKSPITQFLLADNEIDEKFKNTLTFKDLNISKDQIISIFIAEGVLPKNFLSLQHSPNQLPRLKNQQ*
Ga0139176_100001116	F071260	N/A	MMFEDAQDRAMLYSISPELTCTCDQFHTCQQCCEEDNSSSSKSTPEWYDFD*
Ga0139176_100001130	F006840	N/A	METKTPFKKLRGRTILVDVPERKESAIQLSAKDEDMIMQEALKMWNRLTVFAVGDKVEEVAAGDQVYIRTSSLNMEVVERIDVDGKVKLVLNEGDVIIIW*
Ga0139176_10000124	F054451	N/A	METITKSVIKLSEIPVELQQNPMLVGHKVHTYAEFHIEDSEHDDLTKWLLQKYPTLKRKISFLIHINK*
Ga0139176_10000127	F091487	AGTAG	MIEAYMAGAEAITSGDIYRASKEDARNWFDNEYGLTVTDEKCDCCEEKDDE*
Ga0139176_10000133	F004953	N/A	MSENTMMLVQATWNEQQTFRMIPIAESCPYVECIYDPGTKVFVVISKITKNTLHMLPKLDEYGQAVTGAKGMKQDRHKIEVFQEFYVEDHNAMKELVDMFAINNSTFDYNKFVSSVEIAEVAEEAK*
Ga0139176_10000144	F003038	N/A	MGLSTTDLSTGGSGLPKTLAPGNHVLKINSIQLDDYSFIPGAKHLIINVEGEPIEGFQGFLIDKDDESKGHYAGQIGRVKASQYAFADGETKTGIKIQRDRSIMMFMQNLCKTLGINDWFIAQDNLHDTIDDLIKAFNQSAPFQDKYLEFCIAGKEYLNKSGYTNYDLFLPKSDKNKYAFGEAEANKVLTYNETTHLVKAKVSEVSNFGNDEEDLSIPPKTSSDFSLD*
Ga0139176_10000149	F012010	N/A	MTEIFNRLIQENLTPNAYYVLHCIKENVVPKNFVNKELECKRLQSDAWLTADLQLTNKSIIFINEISGFFKKTSKKVSKDLMGADFMQKIQEYVEIFPNRKLSSGKYARTNPKNLESAFKWFFDTYDYSWDLILEAAEKYVKDYELRNFDYMRTSQYFVRKQNIDKSFESELANYCELIKTTPDIDQVYFTEDVV*