Scaffold Ga0137776_1427408

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0137776_1427408

Scaffold Ga0137776_1427408

Overview

Basic Information
Taxon OID	3300010937 Open in IMG/M
Scaffold ID	Ga0137776_1427408 Open in IMG/M
Source Dataset Name	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	551
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Dco-Ecs Fumarole Sampling, Azores 2015

Source Dataset Sampling Location
Location Name	Furnas, Sao Miguel
Coordinates	Lat. (^o)	37.772747	Long. (^o)	-25.304072	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024245	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137776_14274081	F024245	N/A	SGLGMLVAKKQDATSEAQSGALYAPQNPISQQVPPGNGIARNHPET*
Ga0137776_14274082	F024245	GGA	MLVAKKQDETSEAQSGALYAPQNPISQRVPPGNRIARN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.