NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137937_1031372

Scaffold Ga0137937_1031372


Overview

Basic Information
Taxon OID3300010931 Open in IMG/M
Scaffold IDGa0137937_1031372 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_U1383E_lower_OATZ
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)660
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From North Pond, Atlantic Mid-Ocean Ridge.

Source Dataset Sampling Location
Location NameNorth Pond, Atlantic Ocean
CoordinatesLat. (o)22.8Long. (o)-46.05Alt. (m)Depth (m)4425
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035626Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0137937_10313721F035626GAGMLPIGSMAPSIIDNGAVQGETFLPGQIFVFGGFALRANSLGHLEQIESYAPGHQVRFGSLNYTAGIRGDWIFDGFEPRPSAPHCHDGHDLALLLNSALEAAPASASTLNLETTAPIEDGRLDAASGAAIPTV

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