3300010931: Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_U1383E_lower_OATZ

Overview

Basic Information

• IMG/M Taxon OID: 3300010931
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121566 | Gp0156109 | Ga0137937
• Sample Name: Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_U1383E_lower_OATZ
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 101693936
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Aenigmarchaeota → unclassified Aenigmarchaeota → Candidatus Aenigmarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	1
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From North Pond, Atlantic Mid-Ocean Ridge.
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From North Pond, Atlantic Mid-Ocean Ridge.

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.8
  • Long. (^o): -46.05
  • Alt. (m): N/A
  • Depth (m): 4425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006329	Metagenome / Metatranscriptome	376	Y
F034662	Metagenome / Metatranscriptome	174	Y
F035252	Metagenome / Metatranscriptome	172	Y
F035626	Metagenome / Metatranscriptome	171	Y
F059103	Metagenome / Metatranscriptome	134	Y
F062779	Metagenome	130	Y
F077781	Metagenome / Metatranscriptome	117	N
F092086	Metagenome	107	Y
F094843	Metagenome	105	Y
F103292	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0137937_1004236	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Aenigmarchaeota → unclassified Aenigmarchaeota → Candidatus Aenigmarchaeota archaeon	2343
Ga0137937_1012330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1212
Ga0137937_1013155	All Organisms → cellular organisms → Bacteria → Acidobacteria	1165
Ga0137937_1015281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	1058
Ga0137937_1017633	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	966
Ga0137937_1017954	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	955
Ga0137937_1031372	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	660
Ga0137937_1031714	Not Available	655
Ga0137937_1034727	All Organisms → cellular organisms → Bacteria	615
Ga0137937_1039551	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	560

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0137937_1004236	Ga0137937_10042365	F006329	LKEKIKKIEEEKMILELHVADVVDDHKIKMEKMSLKIRKIRKYAIDSEAWYHYDVGSIVTLVANLIAFVVAFKFFKSIIIL*
Ga0137937_1012330	Ga0137937_10123302	F094843	MVACVHVAKILPGKKEEFMQQLKEGFETGREALRSFGFTRIVSFTTPEVVGDGEALLVTVYEAEDPSVVERFYKLEPVLQQEARAHGVLVAPHDHEAVPKNVAFVDMDLTS*
Ga0137937_1013155	Ga0137937_10131552	F034662	MPTVDVAALGTTRKLLGFSRRTVKFEEGTVADLLRSLKTVDGSTLYANLACEGKLRGDFAILVDGLSLQADELDTPLSGGEQVVTMAILRHLAGG*
Ga0137937_1015281	Ga0137937_10152812	F103292	MNLTWRFETQVPYGRFIAVVSEDGAGYSARIEGKIVASPRPGDSNIAVRVIRDRYYGPESVAERSLEVLRRAVEEKIEHDIGTVNRWSVEPS*
Ga0137937_1017633	Ga0137937_10176331	F077781	MESSCPLRPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRAADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*
Ga0137937_1017954	Ga0137937_10179542	F092086	MYNTASRLEKAKVNKYILLLLIAIVLTACSSADDVLENIGDISVPDRLTGCVARNEDGETCEKAVCVADDESDCKSWVKACEKYGHIADVRNGI
Ga0137937_1031372	Ga0137937_10313721	F035626	MLPIGSMAPSIIDNGAVQGETFLPGQIFVFGGFALRANSLGHLEQIESYAPGHQVRFGSLNYTAGIRGDWIFDGFEPRPSAPHCHDGHDLALLLNSALEAAPASASTLNLETTAPIEDGRLDAASGAAIPTV
Ga0137937_1031714	Ga0137937_10317141	F062779	MPLITDSEKEEFDAAIHQAGFQVDDFRIVDLEDEPTAKEQHPNTGTVTVHRVSTDYAITYRAGHGSTWVVDFLADFYAGERL*
Ga0137937_1034727	Ga0137937_10347272	F035252	VTAELERAVRRYKQWFGSYKKSGELKKIQVWLVVNKGRIEFTTQTDSYKVKRVRRNP
Ga0137937_1039551	Ga0137937_10395511	F059103	MSTTDQRDLVLRLGPLDAAAAASILDLCGHLQQAIWRAYGDEIEAHWAATEPDQPIYGRLSPTSSRKR*