Scaffold Ga0133913_10538121

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10538121
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3073
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F031792	Metagenome	181	Y
F033321	Metagenome	177	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1053812111	F031792	GAG	VGEGRLMSYEPPLNDPDFYEEEGEVEPIRCFRCSNGLEEDDIVWANDEGQIVKEGNDTAWCVACLPSEGESK*
Ga0133913_1053812115	F000821	AGGAGG	MTEEYLQAKADLCESLAAKDIQEGEIARAIKNLERANSALYRLGLVREGEGDDN*
Ga0133913_105381214	F086805	GGAG	MSNLTPRGYLVAGIALGLALAGLIWLSSSLWWTGEGYCIGSLVKCFH*
Ga0133913_105381215	F033321	AGG	MSRELEVLREEYKRAVSSPVFDDPKDYCILLDLIQDRMNEIEVRYANY*