Scaffold Ga0133913_10298338

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10298338
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4271
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024785	Metagenome	204	Y
F029717	Metagenome	187	Y
F032279	Metagenome	180	Y
F055728	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_102983381	F029717	AGG	MSNFMDGYVDVATRLKLAFEKYPDLRIQETQREVIEMPDKSCFIRCTVT
Ga0133913_102983383	F055728	GGCGG	MRRGYDPHYGNREQLRDSADRYMIAARERDALKTENKELQEQITELKAIIAYMTEGE*
Ga0133913_102983386	F032279	GAGG	MPTIIKAIIAFALSAIGLGVSQIPVPPEPVIETGFAERYDAVGGFAQTMATIYRYVPPVTTTTPVATVYRHGDCSWLPAVALQAGWSAEQIPQLLKISARESGCCPRRIGGQRVLPDCTPNGFAETTHMSDSGLMQINGVHWMPNHAQYDGLICKQMAICTQEPLLDALTNLRAARLIYSQVGWSAWDICHREKNCK*
Ga0133913_102983387	F024785	N/A	VKPYTVNAAPAVKRPLAGMDLWVTRAVRHSNKSLWNNGSWVVRDVRGKPGTLSNHAKGVAVDLSYRYNSSTNAGRTKSMPYIIKLLENADTLGIQLVIDYTLNRSWKCDRGTWVRGKFSSGDWYHIEVDPVICNSPELAKQAWDRVFGVIPTVTHKPV*