Scaffold Ga0137020_102944

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137020_102944

Scaffold Ga0137020_102944

Overview

Basic Information
Taxon OID	3300010408 Open in IMG/M
Scaffold ID	Ga0137020_102944 Open in IMG/M
Source Dataset Name	Microbial communities from soil contaminated with neutral mine drainage from mine ?rea in Canaa dos Carajas, Brazil - End of the channel, sample P5-2012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Illumina
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	741
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Microbial Communities From Soil Contaminated With Neutral Mine Drainage From Mine ??Rea In Canaa Dos Carajas, Brazil

Source Dataset Sampling Location
Location Name	Canaa dos Carajas, PA, Brazil
Coordinates	Lat. (^o)	-6.42916667	Long. (^o)	-50.06611111	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073995	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137020_1029442	F073995	GAG	VINAARRIGIAFGSFVIAWLAVSLVARWLFGSGNILVWVIAAVVGAGVYLDILRRDRLDR

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