Scaffold Ga0126383_10000176

Overview

Basic Information

• Taxon OID: 3300010398
• Scaffold ID: Ga0126383_10000176
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31749
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (73.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035917	Metagenome	171	Y
F045919	Metagenome	152	Y
F053711	Metagenome	140	Y
F077695	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126383_1000017612	F053711	N/A	MNGRVQTQDVEGLVESVNATGLKLGGAWVNVSRFHPIDMPETGAHVRMKVDSKGYIVSLENLSPKDTPAVVHDRDERITRLAVLKAAAEFVGLWGQTREEVKSEHVLVIADKWLEWVTREGVG*
Ga0126383_1000017619	F045919	N/A	VTDDIYGSRETTVYEIGYPNNISPDVGLHDASGAALQAVLEQYGRESSQSWLDFDTVYELAQGTTGLMSGAAWYHWVGLRGVQGSNLWIANSAPGYKGVYDVLSPYDFQRLGAFSVVWLV
Ga0126383_1000017620	F077695	AGGAG	MTDYNIGPGVQQAIADNGDEARSDERYIILDDGHKISLTLARDSQYWWYEEDNRVNRVPFR*
Ga0126383_1000017625	F035917	AGGTGG	MTDFQFKVVYVDPGNGLIVGMEPSGGAVGNAHKVAVLFDPLEYEALMRTDPAYLSEDKNHVLAAPDHA*