Scaffold Ga0134124_11358448

Overview

Basic Information

• Taxon OID: 3300010397
• Scaffold ID: Ga0134124_11358448
• Source Dataset Name: Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 735
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Kellog Biological Station, Michigan
• Coordinates
  • Lat. (^o): 42.3938
  • Long. (^o): -85.3708

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001935	Metagenome / Metatranscriptome	615	Y
F033892	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134124_113584481	F001935	GAG	LYIKHLTSLQFLTHVGFFAIVLAAMFKFVPGKAPPVRTEPYPEDELGAHDRKTAKYFVAGGFFLVLGSLHMAVKNLPWAAEYLARTGYAGHLVRDLSDTHVMIVGGGTLLSTGLCW
Ga0134124_113584482	F000280	AGAAGG	MAAQEPDQERRAAPARPLVGYRDVGEDVRHSRSTLIRAWVILAVLMAFYLGWTLVIFFLEPGLR*
Ga0134124_113584483	F033892	N/A	FVHAEAEGAVRVHCYTTWDTPEQLEAFLERGYTFERMLVDVAGITAQPTLVMEKVF*