Scaffold Ga0136549_10008982

Overview

Basic Information

• Taxon OID: 3300010389
• Scaffold ID: Ga0136549_10008982
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6834
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Baltimore Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 38.05018333
  • Long. (^o): -73.82193333
  • Depth (m): .12 to .14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068613	Metagenome / Metatranscriptome	124	Y
F088538	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1000898216	F068613	GGAGG	MKARRLGDLCAALIAAWAFAMLGIEAGAHHGTTHSGTQPAVEVRK*
Ga0136549_100089826	F088538	N/A	MTDHKATADQWAYQEHWAQEDGDAACILELRARVEALEANTKQWRTDHLRLANTCAEMAEDRIEFFGKLLPDGESDPEDEILDYYSKLAAQHAGKAVFHQDPSLLQRVCSVLEEQHVAGAVEKSWEPQARAVMLEIARWLETRAGGTRACWLLEREAQG*