NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136549_10007820

Scaffold Ga0136549_10007820


Overview

Basic Information
Taxon OID3300010389 Open in IMG/M
Scaffold IDGa0136549_10007820 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7437
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameBaltimore Canyon, US Atlantic Margin
CoordinatesLat. (o)38.05018333Long. (o)-73.82193333Alt. (m)Depth (m).12 to .14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002502Metagenome / Metatranscriptome553Y
F034945Metagenome / Metatranscriptome173Y
F042350Metagenome / Metatranscriptome158Y
F062573Metagenome / Metatranscriptome130Y
F076122Metagenome / Metatranscriptome118Y
F090460Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0136549_1000782010F042350GAGMVGRESELLRGYIKGVSAMMGLITSDKVKRLDKSNVLGYARELVEQKKVELDER*
Ga0136549_1000782012F076122N/AMAKHEVVNEILEYLDTRRTELSTEMVLYETNSLAYVEMEAMHEVYDHLIAKLEDDYR*
Ga0136549_1000782014F062573GGAGMVKKQLKEFEIKEIRAYIVHAFDEEHALRKFGRYDYESEGDVWPEARELGPVNMSGTGPA
Ga0136549_1000782017F002502AGGAMENITIGSQFTTQKSGVSGTVQEIVKNQNGTSRVRLSLANGDSRWTTVK*
Ga0136549_100078205F034945AGGMGDRANVGIRGTDGNTIFLYLHWGGLDRHELVANGLAHAMERDGDESYFTRIFISRIIGTDWNKATGVGMSINKLSAIGEDYYDVPVYDYLTKKVSVHKERWDVAGCYIDLDPEWVYTRDEYLAEYAVRGVGTYV*
Ga0136549_100078207F090460AGGAGMINDKISDVEYWEGIRDACEYFKDELGIEDAMDTNIAIQAVQELALIGA*
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Institute for Fundamental Biomedical Research
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