Scaffold Ga0136549_10007063

Overview

Basic Information

• Taxon OID: 3300010389
• Scaffold ID: Ga0136549_10007063
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7867
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Baltimore Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 38.05018333
  • Long. (^o): -73.82193333
  • Depth (m): .12 to .14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043838	Metagenome	155	N
F068613	Metagenome / Metatranscriptome	124	Y
F088538	Metagenome / Metatranscriptome	109	N
F096928	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1000706317	F088538	AGGA	MTDYKANADQWAYQEHWAQEDGDAACLLELRARVEALEASTKQWRTDHLRLANTCAEMADDRIEFFGKLLPDGESDPEDEILDYYSKLAAQHAGKAVFHQDPSLLQRVCSVLEEQHVAGAVEKSWEPQARAVMLEIARWLETRAGGTRACWLLEREAQG*
Ga0136549_1000706321	F096928	N/A	MSEFEKISVEEARSRIGRRSKTTPLRDEILSMQAGDAISVSFYNSETGDGYKPTTVAQVVSQMSKDGALRYSMRKNTDGDGCFVMCIAKTPEDALRPKRGRKPKIQETVS*
Ga0136549_100070635	F043838	AGG	MDWTEILSSGGVPEPPGRADALRRLKDERQFVATVRSRSTQLVKTLKLEARDYSHALIKVRGMLAGHTLVRLMED*
Ga0136549_100070636	F068613	GGAGG	MTPHRLGNICAAVIAAWAFAMIGLEVGAHHSPTHSGTQEVAR*