Scaffold Ga0136549_10000402

Overview

Basic Information

• Taxon OID: 3300010389
• Scaffold ID: Ga0136549_10000402
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31515
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (44.05%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Baltimore Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 38.05018333
  • Long. (^o): -73.82193333
  • Depth (m): .12 to .14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F001968	Metagenome / Metatranscriptome	610	Y
F034753	Metagenome	174	Y
F037196	Metagenome / Metatranscriptome	168	Y
F066743	Metagenome / Metatranscriptome	126	Y
F071779	Metagenome / Metatranscriptome	122	Y
F088534	Metagenome / Metatranscriptome	109	Y
F093767	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1000040216	F088534	N/A	MFSTTITNPQTFGNTYQWAILSVLPMDSDKNQHGLNSPEIKSALGLSNAARTSLCLMMKEMAGKGLVQRYDYKVGNRRFVTYKRILPLRKRERIARFLGL*
Ga0136549_1000040223	F001968	N/A	MFDELWNEIQETPGEIFDILELQEEQENFDFDGYLAADYDY*
Ga0136549_1000040224	F037196	N/A	MTKTTITLDQFHDLLSDAYAVCVNDTLYFVGYDMDDNPYIANNDGDDYVDLSTVDGDIEVHPNYVFFYIQEQPIQMVFLQIKKPV*
Ga0136549_1000040230	F071779	N/A	MTTKTTYRVIGFGTNEHGFFNEFAFCSTIGYACGFYDAHLQDPEMDGAVIIRVNHEDWEVIQEFGTIPYSVVYGPLGTFKVERAVDMVMV*
Ga0136549_1000040244	F066743	AGTAG	MVEVEMTQEQLIQSIEQQLENLMHFDDDLAYQYDCDLYYEVADDEEPIPIVEAFTPELLKELEDLVYRLDTQKENN*
Ga0136549_1000040261	F034753	N/A	MRDLITKLTEDYQQKSTYWTGSLFEEVVKLSTDYKGKYGEELMRNIILKYTDIPVQWDEDSNTSNDDGVYDLFWFLHNGKKRRNEIKTSGRTVSKGVAKGWQHENIYFTDNKWDLATFIDYDANDVIYITIVRYDEIVTDNKINLAIFGKNGHCRKNETGKAKVDFSMRSIAHGIKAGVTFKYDLNQPDDDLLSFFLLSKLIGNE*
Ga0136549_1000040271	F001881	N/A	MTERAQEFMNAVWEHRNNGANTEEKLVAAILLIAAENIRSYTAQNDLIVLDKNDLLSLAEELNA*
Ga0136549_1000040274	F093767	N/A	MLDAKDKLIQVKLYSPHKCEFICERENGTHYVYRRLDDEEYYQLHPNPTGETKWLWGEKIK*