Scaffold Ga0136551_1007812

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1007812
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2300
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F050376	Metagenome / Metatranscriptome	145	Y
F066779	Metagenome / Metatranscriptome	126	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10078121	F050376	GGAGG	MTLEEYKAQVEAQRKASLLKAIATMSEANATMSQLF
Ga0136551_10078123	F085708	AGAAG	MNRLITSLVQLALAVPALYMGRMVLREVIADAKEMWQESH*
Ga0136551_10078125	F000447	AGGAG	MGYIEFARIDNDGVEWVSLDNATPSELLDFEIALLQEGAL*
Ga0136551_10078127	F066779	AGGAG	MFSLSYKIEYHTNPAYPLSKEFGHCLGYLVATEEQANEALDLLAKRGTIIETNLVELVDYKPRNRKVYATTRSYE*