Scaffold Ga0136551_1001759

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1001759
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5469
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F011487	Metagenome / Metatranscriptome	290	Y
F045756	Metagenome	152	Y
F099300	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100175913	F045756	GGA	MTKYNVIISYVCESESELEAIFDLNKTLRPLSENELEKFNAFHVEEITQ*
Ga0136551_100175914	F003965	N/A	MITLETKKCVEHTPLNSSTWIEIGDDQFSFCKDCEKEITRWYDDTDPERLPMWTDWKVSK
Ga0136551_10017593	F011487	AGGAG	MTYENDEYLDAYYATTCPSCKENAVDEYEEKCTHCLLEEMSAMYNEDIALEMSLGLDY*
Ga0136551_10017598	F099300	AGG	MSKMKTLYADIVTCDLCYGSGWLFFGNGIDYDTESCDCNPHQLFITKENN*