Scaffold Ga0136551_1001113

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1001113
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7063
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004051	Metagenome / Metatranscriptome	455	Y
F006744	Metagenome / Metatranscriptome	365	Y
F008132	Metagenome / Metatranscriptome	338	Y
F017995	Metagenome / Metatranscriptome	237	Y
F024319	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100111312	F006744	N/A	MNLEEFKKHVISQREATKAEALSVLSATIPTTNERENLNG*
Ga0136551_100111313	F017995	GGA	MAKVKELVEIVSAECDECGGAGFIFFGSELEYDVEPCDCIAEVEDELTVDWVNE*
Ga0136551_100111321	F004051	AGGA	MTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLIELPTKETRWTTVSNTSLV*
Ga0136551_10011137	F024319	AGTAGG	MTNRVYESRNDYMTPSHYVACSSGCGRVTAWTLCVMCGGEYATHALVNVR*
Ga0136551_10011139	F008132	AGG	MSKWDTIQADVQDQYAHLAEEEMYEKLMAEEEDVFGFTKAIQIDHLTDDQLDEVFNMFGDK*