Basic Information | |
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Taxon OID | 3300010388 Open in IMG/M |
Scaffold ID | Ga0136551_1001005 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7425 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (89.47%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland |
Source Dataset Sampling Location | ||||||||
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Location Name | Jussy, Geneva, SWITZERLAND | |||||||
Coordinates | Lat. (o) | 46.25 | Long. (o) | 6.28 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000311 | Metagenome / Metatranscriptome | 1326 | Y |
F000450 | Metagenome / Metatranscriptome | 1126 | Y |
F002071 | Metagenome / Metatranscriptome | 596 | Y |
F005177 | Metagenome / Metatranscriptome | 409 | Y |
F057778 | Metagenome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136551_100100510 | F002071 | AGGA | MLEVGQTYTTLSSGVTGTIKAVDNHPSGVNRILLDVNGAERWTSAPAI* |
Ga0136551_100100511 | F057778 | AGGAGG | MDTQATEIIEALNDYYKNPEEYTFQDLEDIFQDRDPMEFL* |
Ga0136551_10010052 | F000450 | GGCGG | MGDRANFVFVQPNGESIVLYGHWAGHNMLANLAEAAIKAQGRWSDPSYATRIAISNMVGEGWAMETGWGLAVNEILDNEHKIPVIDFRQQTFSLHEEASWSDESNKVRGMKNDAIFTQDLATFCEKYSDSLVRV* |
Ga0136551_10010055 | F000311 | GAGG | MYFELTAPSQVALNGAIWEAETIGLDPQVIGPLTFNVGTGSIEKVSRIRDKFNLIESYTSDYESTGY* |
Ga0136551_10010058 | F005177 | AGGA | MKNRYRVEIYDDIKSNDLTIHSATLVDKEYLTELVFSNIRQFSGNIKAFVYDNVKKKKVTALILPLETVSKVNSLIPPLTNLV* |
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