Scaffold Ga0136551_1000674

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1000674
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9353
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (92.59%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002935	Metagenome	519	Y
F005531	Metagenome / Metatranscriptome	397	Y
F017829	Metagenome / Metatranscriptome	238	Y
F019325	Metagenome / Metatranscriptome	230	Y
F020168	Metagenome / Metatranscriptome	225	Y
F050376	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10006741	F019325	AGGAG	MTQLTETLYSTIVHDFHNGGVKSSYGLDTYTRKAILKALLSSKGCECVNCL*
Ga0136551_100067412	F050376	AGCAGG	MNLDEYKAYVEAQRKASLQKAIATMSEANDKMSSLFGTKEAN*
Ga0136551_100067414	F020168	GAG	MIDVIGSLIAIMLILFLCSPIILAVYMWNAAKVDVDNDGKEDLPNRW*
Ga0136551_100067415	F002245	AGG	MSNLIKVPHTVTFEAIIDLDKVPSSIINQLINLDEQTLVYMCKGATVHALGMSNVLPLANENNTWAELTVKEGN*
Ga0136551_100067419	F017829	AGG	MANRFRVEIYDANKLNDITIYSDQGVDKEYLTELVFSNIRKFSGKINAYVFDNVKKKKTTAMFLDEHTVEFSQNMIRNATKVELGS*
Ga0136551_100067422	F002935	AGGA	MDRRESRTNGYIGTIVDGVKLAEIANGIYNLQYSSDFSKCTVDSLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCLTDRTEDIADYIRIFGDRLDRNCSLWQSKMSVGAGTIAV*
Ga0136551_100067424	F000311	AGAAGG	MYFELTAPSQVAFARATWEAEMIGLDPQTIAPLTFNIGTGSIEKVSRIRDKYNLVESYTSDYEPTGYTGR*
Ga0136551_100067425	F001043	GGAG	MSDYKDGFQDGYKFAREELMEKLAEIDIADIDSWILDRLSEMIEGNQL*
Ga0136551_100067427	F001125	GGCGG	MGDRANFGFKDRKGDTVFLYGHWAGHRMLENLANAVEAARPRWTDETYATRIAISQLVGDEWQSETGWGISINQLADNEHKVPVIDWANATFTLMEEDLQTVVFTSSLDSFVNKYSQLEEPAMV*
Ga0136551_10006743	F005531	GGAG	MTITYSLWQGSQLLSVNNKASKPEEILAVIEELNKLGKGFTFNVREVDTK*
Ga0136551_10006747	F000447	GAG	MGYIEIFRINEEGAGWVDLSEATPAELIDLEIGLFQEGAL*