Scaffold Ga0136551

Basic Information
Taxon OID	3300010388 Open in IMG/M
Scaffold ID	Ga0136551_1000378 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010388 Open in IMG/M

Scaffold ID

Ga0136551_1000378 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12855
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (84.62%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12855

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (84.62%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location Name	Jussy, Geneva, SWITZERLAND
Coordinates	Lat. (^o)	46.25	Long. (^o)	6.28	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Jussy, Geneva, SWITZERLAND

Coordinates

Lat. (^o)

46.25

Long. (^o)

6.28

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F003422	Metagenome / Metatranscriptome	487	Y
F007263	Metagenome / Metatranscriptome	354	Y
F038205	Metagenome / Metatranscriptome	166	Y
F038241	Metagenome / Metatranscriptome	166	Y
F063708	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_100037811	F000263	AGGA	MEFKPDYNVPPHLQRMIDAGVSGLDIMHGELKNLMLIAEQELGEAQAREDETEEAMDSMDRTRCEGALDTLIALYELTYQLSFAIGARDEG*
Ga0136551_100037812	F063708	AGAAGG	MSNQLIEYLKLHLISLNQDLESHDNPETKIHLDGQIVATRHLLSVAEDIL*
Ga0136551_100037813	F038241	GAGG	MLGYTKEDLDQMSNSVHDAKLFYILNSDVIKVDEDPIVDGLLKAQDFLQGLWAEGYFDNE
Ga0136551_100037828	F038205	GGA	MIKEIIAVACDECNGAGFIFWGDENNFDVESCQCNFDETDLI*
Ga0136551_100037834	F007263	AGG	MNKLKNQIDENEFYQIVDEMFYCCDESQFRHYCKKHTELMGCYYCEFDYSKECECE*
Ga0136551_10003786	F003422	AGGTGG	MTDNLISSKYTFVCDPEECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATLNKPTNEREEMLDNLEATIAIEPEYNPNQLVTYKKIHGYTDPEIVTEKVTSLEWDLHNGRQASKHNAVLQGKIDSVRDIITESYAESEDQETLRSIAEALNIELTRTVEWSATIEVSGTMEVDILEDLDIEQEIYDNLYVDSQNGNIEIVDTEVCNAREC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136551_1000378

Overview

Ecosystem & Geography

Associated Families

Sequences