NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136551_1000378

Scaffold Ga0136551_1000378


Overview

Basic Information
Taxon OID3300010388 Open in IMG/M
Scaffold IDGa0136551_1000378 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12855
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (84.62%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F003422Metagenome / Metatranscriptome487Y
F007263Metagenome / Metatranscriptome354Y
F038205Metagenome / Metatranscriptome166Y
F038241Metagenome / Metatranscriptome166Y
F063708Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0136551_100037811F000263AGGAMEFKPDYNVPPHLQRMIDAGVSGLDIMHGELKNLMLIAEQELGEAQAREDETEEAMDSMDRTRCEGALDTLIALYELTYQLSFAIGARDEG*
Ga0136551_100037812F063708AGAAGGMSNQLIEYLKLHLISLNQDLESHDNPETKIHLDGQIVATRHLLSVAEDIL*
Ga0136551_100037813F038241GAGGMLGYTKEDLDQMSNSVHDAKLFYILNSDVIKVDEDPIVDGLLKAQDFLQGLWAEGYFDNE
Ga0136551_100037828F038205GGAMIKEIIAVACDECNGAGFIFWGDENNFDVESCQCNFDETDLI*
Ga0136551_100037834F007263AGGMNKLKNQIDENEFYQIVDEMFYCCDESQFRHYCKKHTELMGCYYCEFDYSKECECE*
Ga0136551_10003786F003422AGGTGGMTDNLISSKYTFVCDPEECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATLNKPTNEREEMLDNLEATIAIEPEYNPNQLVTYKKIHGYTDPEIVTEKVTSLEWDLHNGRQASKHNAVLQGKIDSVRDIITESYAESEDQETLRSIAEALNIELTRTVEWSATIEVSGTMEVDILEDLDIEQEIYDNLYVDSQNGNIEIVDTEVCNAREC*

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